CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Bm1_48895
(
Brugia malayi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Bm1_48895
T28421_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPN1
M148_0.6
Homo sapiens
ARAAGA
RNAcompete
Ray et al.(2013)
RNCMPT00157
0.871
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bm1_48895
RRM
93
162
VYVGNVDYCSTAEELEAHFHGCGSVNRVTILTDKFTGHPKGFAYIEFADKEAVQTALALDESLFRGRQIK
Links
Other
RRM
family RBPs
Other
Brugia malayi
RBPs
97 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm106174
Nasonia vitripennis
nasonia_NCBI_hmm106174
N
0.000
nasonia_NCBI_hmm46964
Nasonia vitripennis
nasonia_NCBI_hmm46964
N
0.000
nasonia_NCBI_hmm289284
Nasonia vitripennis
nasonia_NCBI_hmm289284
N
0.000
nasonia_NCBI_hmm270874
Nasonia vitripennis
nasonia_NCBI_hmm270874
N
0.000
nasonia_NCBI_hmm224094
Nasonia vitripennis
nasonia_NCBI_hmm224094
N
0.000
nasonia_NCBI_hmm223144
Nasonia vitripennis
nasonia_NCBI_hmm223144
N
0.000
nasonia_NCBI_hmm222254
Nasonia vitripennis
nasonia_NCBI_hmm222254
N
0.000
nasonia_NCBI_hmm220044
Nasonia vitripennis
nasonia_NCBI_hmm220044
N
0.000
nasonia_NCBI_hmm190284
Nasonia vitripennis
nasonia_NCBI_hmm190284
N
0.000
nasonia_NCBI_hmm152214
Nasonia vitripennis
nasonia_NCBI_hmm152214
N
0.000
nasonia_NCBI_hmm146224
Nasonia vitripennis
nasonia_NCBI_hmm146224
N
0.000
nasonia_NCBI_hmm132364
Nasonia vitripennis
nasonia_NCBI_hmm132364
N
0.000
nasonia_NCBI_hmm124374
Nasonia vitripennis
nasonia_NCBI_hmm124374
N
0.000
nasonia_NCBI_hmm5074
Nasonia vitripennis
nasonia_NCBI_hmm5074
N
0.000