CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_08590
(
Puccinia graminis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PGTG_08590
T30012_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_08590
RRM
111
182
LYVGNLSPRVTEYMLQEIFSVAGPVQGVKIIPDRNFQHGGLNYGFVEYYEMRSAETALQTLGGRKIFDTEIR
PGTT_08590
RRM
204
274
VFVGDLSPEVNDEVLAKAFAAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR
PGTT_08590
RRM
327
391
VYTGNLVPYSTQADLIPLFQGFGYIVEIRMQADRGFAFVKMDTHENAAMAIVNLTGTPVHGRPLK
Links
Other
RRM
family RBPs
Other
Puccinia graminis
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_03708
Coprinopsis cinerea
CC1G_03708
N
0.880
estExt_Genewise1.C_11756
Heterobasidion annosum
estExt_Genewise1.C_11756
N
0.880
estExt_fgeneshTM_pm.C_70082
Tremella mesenterica
estExt_fgeneshTM_pm.C_70082
N
0.750
estExt_fgenesh2_kg.C_11202
Serpula lacrymans
estExt_fgenesh2_kg.C_11202
N
0.875
estExt_fgenesh2_kg.C_10652
Agaricus bisporus
estExt_fgenesh2_kg.C_10652
N
0.889
gwh2.11.204.1
Phanerochaete chrysosporium
gwh2.11.204.1
N
0.889
gw1.8.122.1
Sporobolomyces roseus
gw1.8.122.1
N
0.851
estExt_Genewise1Plus.C_850030
Postia placenta
estExt_Genewise1Plus.C_850030
N
0.889
estExt_Genewise1.C_1650013
Postia placenta
estExt_Genewise1.C_1650013
N
0.889
estExt_fgenesh2_pg.C_10913
Schizophyllum commune
estExt_fgenesh2_pg.C_10913
N
0.880
estExt_fgenesh1_pm.C_10116
Melampsora laricis populina
estExt_fgenesh1_pm.C_10116
N
0.976
estExt_fgenesh1_kg.C_10369
Schizophyllum commune
estExt_fgenesh1_kg.C_10369
N
0.880
e_gww1.1.421.1
Laccaria bicolor
e_gww1.1.421.1
N
0.885
PTTG_06273
Puccinia triticina
PTTG_06273
N
0.986
MCYG_03737
Microsporum canis
MCYG_03737
N
0.702
CNBG_5957
Cryptococcus neoformans
CNBG_5957
N
0.827
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.702
estExt_Genewise1Plus.C_30831
Pleurotus ostreatus
estExt_Genewise1Plus.C_30831
N
0.885