CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CC1G_03708
(
Coprinopsis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CC1G_03708
T28535_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CC1G_03708T0
RRM
18
89
LYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRAAETALQTLNGRKIFDTEIR
CC1G_03708T0
RRM
109
179
VFVGDLSPEVNDEVLGKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR
CC1G_03708T0
RRM
231
295
VYVGNLVPYTTQADLIPLFQSIGYLSEIRMQADRGFAFVKLDTHEHAAQAIVQLQGQMVHGRPIK
Links
Other
RRM
family RBPs
Other
Coprinopsis cinerea
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gwh2.11.204.1
Phanerochaete chrysosporium
gwh2.11.204.1
N
0.986
estExt_Genewise1Plus.C_850030
Postia placenta
estExt_Genewise1Plus.C_850030
N
0.986
estExt_Genewise1.C_1650013
Postia placenta
estExt_Genewise1.C_1650013
N
0.986
estExt_fgenesh2_kg.C_11202
Serpula lacrymans
estExt_fgenesh2_kg.C_11202
N
0.981
estExt_Genewise1Plus.C_30831
Pleurotus ostreatus
estExt_Genewise1Plus.C_30831
N
0.981
e_gww1.1.421.1
Laccaria bicolor
e_gww1.1.421.1
N
0.981
estExt_fgenesh2_kg.C_10652
Agaricus bisporus
estExt_fgenesh2_kg.C_10652
N
0.976
estExt_Genewise1.C_11756
Heterobasidion annosum
estExt_Genewise1.C_11756
N
0.966
estExt_fgenesh2_pg.C_10913
Schizophyllum commune
estExt_fgenesh2_pg.C_10913
N
0.966
estExt_fgenesh1_kg.C_10369
Schizophyllum commune
estExt_fgenesh1_kg.C_10369
N
0.966
PGTG_08590
Puccinia graminis
PGTG_08590
N
0.880
PTTG_06273
Puccinia triticina
PTTG_06273
N
0.870
estExt_fgenesh1_pm.C_10116
Melampsora laricis populina
estExt_fgenesh1_pm.C_10116
N
0.870
CNBG_5957
Cryptococcus neoformans
CNBG_5957
N
0.841
gw1.8.122.1
Sporobolomyces roseus
gw1.8.122.1
N
0.812
estExt_fgeneshTM_pm.C_70082
Tremella mesenterica
estExt_fgeneshTM_pm.C_70082
N
0.760