CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPIJ006198
(
Culex quinquefasciatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPIJ006198
T34244_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPIJ006198-PA
RRM
82
146
MMVYGLDSSTANTDKLFNLFCLYGNVVRIKFLKTKEGTAMVQMGDAIAVERSIQHLNNIPIGNDG
CPIJ006198-PA
RRM
207
272
FNTPPGMSEDQLLQAFTSKDCHPAQVRMFPLKSERSSSGLVEFPSVSLAVAAIMKCNHSAIDHKGT
Links
Other
RRM
family RBPs
Other
Culex quinquefasciatus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
sm
Drosophila melanogaster
FBgn0003435
D
0.720
CpipJ_CPIJ006198
Culex pipiens
CpipJ_CPIJ006198
N
1.000
CpipJ_CPIJ018342
Culex pipiens
CpipJ_CPIJ018342
N
0.977
AAEL009659
Aedes aegypti
AAEL009659
N
0.954
AGAP012054
Anopheles gambiae
AGAP012054
N
0.870
CPIJ018342
Culex quinquefasciatus
CPIJ018342
N
0.977
GF13176
Drosophila ananassae
FBgn0090209
N
0.720
GG20899
Drosophila erecta
FBgn0113083
N
0.720
GM19822
Drosophila sechellia
FBgn0174708
N
0.720