CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIA1
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCHOG00000003904
T35267_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.712
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.712
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000003457
RRM
9
77
LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGKEVK
ENSCHOP00000003457
RRM
108
137
VFVGDLSPEITTEDIKAAFAPFGRISXXXX
ENSCHOP00000003457
RRM
218
273
XXXQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT2G43970
Arabidopsis thaliana
AT2G43970-TAIR-G
N
0.000
MDP0000319338
Malus x domestica
MDP0000319338
N
0.000
chr1.CM0105.1300.nc
Lotus japonicus
chr1.CM0105.1300.nc
N
0.000
Glyma19g45320.1
Glycine max
Glyma19g45320.1
N
0.000
Glyma03g42540.1
Glycine max
Glyma03g42540.1
N
0.000
Cucsa.151410
Cucumis sativus
Cucsa.151410
N
0.000
cassava38202.valid.m1
Manihot esculenta
cassava38202.valid.m1
N
0.000
cassava38201.valid.m1
Manihot esculenta
cassava38201.valid.m1
N
0.000
30042.m000490
Ricinus communis
30042.m000490
N
0.000
SB05G006890
Sorghum bicolor
Sb05g006890
N
0.000
B9IJ52_POPTR
Populus trichocarpa
POPTR_0017s04020
N
0.000
B9HGC1_POPTR
Populus trichocarpa
POPTR_0007s00450
N
0.000
GSVIVG00038251001
Vitis vinifera
GSVIVG00038251001
N
0.000
XM_002881897.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4002119
N
0.000
ppa005181m
Prunus persica
ppa005181m
N
0.000