TIA1 (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCHOG00000003904 T35267_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.712
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000003457 RRM 9 77
ENSCHOP00000003457 RRM 108 137
ENSCHOP00000003457 RRM 218 273

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G43970 Arabidopsis thaliana AT2G43970-TAIR-G N 0.000
MDP0000319338 Malus x domestica MDP0000319338 N 0.000
chr1.CM0105.1300.nc Lotus japonicus chr1.CM0105.1300.nc N 0.000
Glyma19g45320.1 Glycine max Glyma19g45320.1 N 0.000
Glyma03g42540.1 Glycine max Glyma03g42540.1 N 0.000
Cucsa.151410 Cucumis sativus Cucsa.151410 N 0.000
cassava38202.valid.m1 Manihot esculenta cassava38202.valid.m1 N 0.000
cassava38201.valid.m1 Manihot esculenta cassava38201.valid.m1 N 0.000
30042.m000490 Ricinus communis 30042.m000490 N 0.000
SB05G006890 Sorghum bicolor Sb05g006890 N 0.000
B9IJ52_POPTR Populus trichocarpa POPTR_0017s04020 N 0.000
B9HGC1_POPTR Populus trichocarpa POPTR_0007s00450 N 0.000
GSVIVG00038251001 Vitis vinifera GSVIVG00038251001 N 0.000
XM_002881897.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002119 N 0.000
ppa005181m Prunus persica ppa005181m N 0.000