CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIA1
(
Equus caballus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSECAG00000022361
T36703_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.766
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.766
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000020060
RRM
9
77
LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGKEVK
ENSECAP00000020060
RRM
108
161
VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWVSS
ENSECAP00000020060
RRM
236
281
TPLGQPLFLSIFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Equus caballus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSTBEG00000017228
Tupaia belangeri
ENSTBEG00000017228
I
0.804
TIA1
Taeniopygia guttata
ENSTGUG00000017307
I
0.784
TIA1
Vicugna pacos
ENSVPAG00000007449
I
0.775
TIA1
Pteropus vampyrus
ENSPVAG00000004846
I
0.775
ENSACAG00000009648
Anolis carolinensis
ENSACAG00000009648
I
0.771
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.771
Q0VBZ6_BOVIN
Bos taurus
ENSBTAG00000019182
I
0.771
TIA1
Loxodonta africana
ENSLAFG00000003463
I
0.771
TIA1
Dasypus novemcinctus
ENSDNOG00000016356
I
0.766
TIA1
Echinops telfairi
ENSETEG00000010021
I
0.766
TIA1
Tursiops truncatus
ENSTTRG00000001195
I
0.766
Q800W4_CHICK
Gallus gallus
ENSGALG00000013879
I
0.766
Ame_R002705
Ailuropoda melanoleuca
Ame_R002705
I
0.766
TIA1
Homo sapiens
ENSG00000116001
D
0.766
TIA1
Callithrix jacchus
ENSCJAG00000019278
I
0.766
TIA1
Canis familiaris
ENSCAFG00000003341
I
0.766
TIA1
Otolemur garnettii
ENSOGAG00000010572
I
0.766
TIA1
Oryctolagus cuniculus
ENSOCUG00000011204
I
0.766
TIA1
Cavia porcellus
ENSCPOG00000008327
I
0.766
TIA1
Pan troglodytes
ENSPTRG00000023495
I
0.766
TIA1
Macaca mulatta
ENSMMUG00000001126
I
0.766
Tia1
Mus musculus
ENSMUSG00000071337
I
0.761
TIA1
Meleagris gallopavo
ENSMGAG00000003493
I
0.761
Tia1
Rattus norvegicus
ENSRNOG00000016813
I
0.756
ENSPPYG00000012326
Pongo pygmaeus
ENSPPYG00000012326
I
0.751
TIA1
Choloepus hoffmanni
ENSCHOG00000003904
I
0.737
tia1
Xenopus tropicalis
ENSXETG00000008514
I
0.727
AAH80105
Xenopus laevis
AAH80105
I
0.722
tia1
Danio rerio
ENSDARG00000052536
I
0.717
TIA1
Oryzias latipes
ENSORLG00000015642
I
0.717
TIA1
Tetraodon nigroviridis
ENSTNIG00000011433
I
0.712
TIA1
Takifugu rubripes
ENSTRUG00000015136
I
0.712
AAH77169
Xenopus laevis
AAH77169
I
0.712
CAC95018
Xenopus laevis
CAC95018
I
0.712
Tia1
Dipodomys ordii
ENSDORG00000008601
I
0.702