CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCPOG00000024507
(
Cavia porcellus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCPOG00000024507
T35911_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000014586
RRM
230
262
LFITGLPKDAKEENVERHFWDAYPTCEVADVQL
ENSCPOP00000014586
RRM
336
378
TEEECQVQDQPLGMAFVTFREKSMATYILKDFRACKCQSCQCK
Links
Other
RRM
family RBPs
Other
Cavia porcellus
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
UM04861
Ustilago maydis
UM04861
N
0.000
e_gw1.121.83.1
Postia placenta
e_gw1.121.83.1
N
0.000
e_gw1.17.191.1
Trichoderma reesei
e_gw1.17.191.1
N
0.000
estExt_fgenesh1_pm.C_20437
Schizophyllum commune
estExt_fgenesh1_pm.C_20437
N
0.000
estExt_Genewise1_worm.C_60324
Laccaria bicolor
estExt_Genewise1_worm.C_60324
N
0.000
gwh2.1.1054.1
Phanerochaete chrysosporium
gwh2.1.1054.1
N
0.000
estExt_fgenesh2_kg.C_120041
Serpula lacrymans
estExt_fgenesh2_kg.C_120041
N
0.000
estExt_fgenesh2_kg.C_20664
Agaricus bisporus
estExt_fgenesh2_kg.C_20664
N
0.000
gw1.1.2136.1
Pleurotus ostreatus
gw1.1.2136.1
N
0.000