CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R015338
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R015338
T55619_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R015338
RRM
230
265
LFITGLPRDTKKETVENHFRDAYPTCEVLDVQLCYN
Ame_R015338
RRM
336
378
AEEECRVQERPLGMAFVTFQEKSMATYVLKDFNACKCQNLQCK
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TMEM63A
Tursiops truncatus
ENSTTRG00000010132
N
0.852
TMEM63A
Oryctolagus cuniculus
ENSOCUG00000001907
N
0.840
TMEM63A
Sus scrofa
ENSSSCG00000010854
N
0.840
TMEM63A
Felis catus
ENSFCAG00000006966
N
0.838
A7MB88_BOVIN
Bos taurus
ENSBTAG00000002854
N
0.829
TMEM63A
Homo sapiens
ENSG00000196187
N
0.827
XR_022984.1
Pan troglodytes
ENSPTRG00000002040
N
0.827
TMEM63A
Gorilla gorilla
ENSGGOG00000000862
N
0.827
TMEM63A
Callithrix jacchus
ENSCJAG00000012604
N
0.815
TMEM63A
Ochotona princeps
ENSOPRG00000012151
N
0.810
Tmem6
Rattus norvegicus
ENSRNOG00000003310
N
0.797
Tmem63a
Mus musculus
ENSMUSG00000026519
N
0.797
LOC100057436
Equus caballus
ENSECAG00000018566
N
0.790
TMEM63A
Microcebus murinus
ENSMICG00000004058
N
0.783
TMEM63A
Echinops telfairi
ENSETEG00000012297
N
0.780
TMEM63A
Myotis lucifugus
ENSMLUG00000016338
N
0.772
TMEM63A
Loxodonta africana
ENSLAFG00000017739
N
0.767
TMEM63A
Pteropus vampyrus
ENSPVAG00000004786
N
0.753
ENSCPOG00000024507
Cavia porcellus
ENSCPOG00000024507
N
0.750
TMEM63A
Otolemur garnettii
ENSOGAG00000010346
N
0.744
TMEM63A
Macropus eugenii
ENSMEUG00000003227
N
0.725
TMEM63A
Ornithorhynchus anatinus
ENSOANG00000001474
N
0.722
TMEM63A
Dasypus novemcinctus
ENSDNOG00000024203
N
0.716
Tmem63a
Dipodomys ordii
ENSDORG00000003334
N
0.700