PTBP1 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000011048 T37484_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.825
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.825
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.825
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000014611 RRM 76 133
ENSGACP00000014611 RRM 201 267
ENSGACP00000014611 RRM 386 452
ENSGACP00000014611 RRM 503 567

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
setd1ba Danio rerio ENSDARG00000060847 N 0.000
ENSDARG00000078930 Danio rerio ENSDARG00000078930 N 0.000
SETD1B Gasterosteus aculeatus ENSGACG00000017002 N 0.000
SETD1B Oryzias latipes ENSORLG00000008435 N 0.000
SETD1B Tetraodon nigroviridis ENSTNIG00000009090 N 0.000
SETD1B Takifugu rubripes ENSTRUG00000009533 N 0.000