PTBP1 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000011048 T37484_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.825
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.825
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.825
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000014611 RRM 76 133
ENSGACP00000014611 RRM 201 267
ENSGACP00000014611 RRM 386 452
ENSGACP00000014611 RRM 503 567

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.935
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.930
ptbp1a Danio rerio ENSDARG00000019362 I 0.907
ptbp1b Danio rerio ENSDARG00000031907 I 0.891
AAH45068 Xenopus laevis AAH45068 I 0.845
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.840
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.840
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.837
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.837
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.837
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.833
AAF00041 Xenopus laevis AAF00041 I 0.829
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.826
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.825
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.825
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.825
PTBP1 Homo sapiens ENSG00000011304 D 0.825
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.825
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.825
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.825
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.821
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.818
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.813
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.813
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.809
PTBP1 Equus caballus ENSECAG00000018845 I 0.805
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.798
ROD1 Danio rerio ENSDARG00000043757 I 0.794
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.791
ROD1 Equus caballus ENSECAG00000021243 I 0.786
ROD1 Sus scrofa ENSSSCG00000005466 I 0.786
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.779
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.775
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.774
ROD1 Bos taurus ENSBTAG00000016750 I 0.774
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.771
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.771
Rod1 Mus musculus ENSMUSG00000028382 I 0.771
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.771
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.767
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.767
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.767
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.767
ROD1 Homo sapiens ENSG00000119314 I 0.767
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.767
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.767
AAH97557 Xenopus laevis AAH97557 I 0.764
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.763
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.763
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.763
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.756
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.755
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.751
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.737
ROD1 Canis familiaris ENSCAFG00000003015 I 0.736
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.736
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.736
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.736
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.734
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.733
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.733
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.733
PTBP2 Homo sapiens ENSG00000117569 I 0.733
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.733
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.733
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.733
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.733
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.733
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.733
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.733
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.733
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.733
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.733
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.733
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.733
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.733
LOC100057336 Equus caballus ENSECAG00000015783 I 0.730
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.725
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.725
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.713
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.709
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.708
PTBP2 Danio rerio ENSDARG00000015901 I 0.706