CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
HNRNPA3
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000007605
T41324_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.821
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.821
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.821
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.800
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.743
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000006889
RRM
10
79
LFIGGLSFETTDDGLREHFEKWGTLTDCVVMRDPQTKRSRDFGFVTYSCVEEVDAAVCARPQKADGRVVE
ENSSARP00000006889
RRM
101
170
IFVGSIKEDTEEYNLRDYFEKYGKIETIEVMGDRESGKERGFAFITFDDHDTVDKIVVQKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
217 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SART3
Gasterosteus aculeatus
ENSGACG00000008787
N
0.000
SART3
Tetraodon nigroviridis
ENSTNIG00000015867
N
0.000
SART3
Takifugu rubripes
ENSTRUG00000014173
N
0.000