NCL (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000001796 T42708_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000001656 RRM 302 370
ENSVPAP00000001656 RRM 419 453
ENSVPAP00000001656 RRM 481 547
ENSVPAP00000001656 RRM 567 634

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g23190 Oryza sativa LOC_Os03g23190 N 0.000
LOC_Os05g17350 Oryza sativa LOC_Os05g17350 N 0.000
LOC_Os06g16850 Oryza sativa LOC_Os06g16850 N 0.000
LOC_Os06g31670 Oryza sativa LOC_Os06g31670 N 0.000
LOC_Os07g25850 Oryza sativa LOC_Os07g25850 N 0.000
LOC_Os09g14330 Oryza sativa LOC_Os09g14330 N 0.000
LOC_Os09g14370 Oryza sativa LOC_Os09g14370 N 0.000