NCL (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000001796 T42708_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000001656 RRM 302 370
ENSVPAP00000001656 RRM 419 453
ENSVPAP00000001656 RRM 481 547
ENSVPAP00000001656 RRM 567 634

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Canis familiaris ENSCAFG00000011037 I 0.841
NCL Tursiops truncatus ENSTTRG00000009094 I 0.837
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.837
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.837
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.833
NCL Bos taurus ENSBTAG00000016174 I 0.833
NCL Homo sapiens ENSG00000115053 D 0.826
NCL Macaca mulatta ENSMMUG00000018094 I 0.826
NCL Pan troglodytes ENSPTRG00000013025 I 0.826
NCL Gorilla gorilla ENSGGOG00000004300 I 0.826
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.826
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.819
NCL Tarsius syrichta ENSTSYG00000004355 I 0.815
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.815
NCL Microcebus murinus ENSMICG00000002538 I 0.789
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.781
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.777
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.774
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.774
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.774
Ncl Mus musculus ENSMUSG00000026234 I 0.767
Ncl Dipodomys ordii ENSDORG00000012513 I 0.748
NCL Sorex araneus ENSSARG00000010007 I 0.713
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.707
NCL Cavia porcellus ENSCPOG00000001034 I 0.704
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.701