sm (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0003435 T42990_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sm
M067_0.6		 Drosophila melanogaster ABACACV RNAcompete
Ray et al.(2013)
RNCMPT00069 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M067_0.6 RRM 51 110
M067_0.6 RRM 204 266
M067_0.6 RRM 328 394

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0085681 RRM 90 149
FBpp0085681 RRM 243 305
FBpp0085681 RRM 367 433
FBpp0085684 RRM 172 234
FBpp0085684 RRM 296 362
FBpp0099612 RRM 90 149
FBpp0099612 RRM 243 305
FBpp0099612 RRM 367 433
FBpp0110198 RRM 28 90
FBpp0110198 RRM 152 218
FBpp0290824 RRM 90 149
FBpp0290824 RRM 248 310
FBpp0290824 RRM 372 438
FBpp0290825 RRM 188 250
FBpp0290825 RRM 312 378
FBpp0293195 RRM 232 294
FBpp0293195 RRM 356 422
FBpp0293196 RRM 90 149
FBpp0293196 RRM 303 365
FBpp0293196 RRM 427 493
FBpp0293197 RRM 90 149
FBpp0293197 RRM 260 322
FBpp0293197 RRM 384 450
FBpp0293198 RRM 90 149
FBpp0293198 RRM 265 327
FBpp0293198 RRM 389 455

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GE13838 Drosophila yakuba FBgn0231486 I 1.000
GK15699 Drosophila willistoni FBgn0217702 I 0.979
GJ21415 Drosophila virilis FBgn0208541 I 0.968
GI18546 Drosophila mojavensis FBgn0141285 I 0.968
GH22768 Drosophila grimshawi FBgn0130225 I 0.968
GA21622-RA Drosophila pseudoobscura FBgn0081607 I 0.816
GM19822 Drosophila sechellia FBgn0174708 N 1.000
GG20899 Drosophila erecta FBgn0113083 N 0.992
GF13176 Drosophila ananassae FBgn0090209 N 0.985
CPIJ018342 Culex quinquefasciatus CPIJ018342 N 0.705
CPIJ006198 Culex quinquefasciatus CPIJ006198 N 0.720
AGAP012054 Anopheles gambiae AGAP012054 N 0.733
AAEL009659 Aedes aegypti AAEL009659 N 0.712
CpipJ_CPIJ018342 Culex pipiens CpipJ_CPIJ018342 N 0.705
CpipJ_CPIJ006198 Culex pipiens CpipJ_CPIJ006198 N 0.720