rump (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0260010 T44421_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
rump
M288_0.6		 Drosophila melanogaster Sequence logo not available GGAGG RIP-chip
Cook et al.(2011)
34_15781475 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0081601 RRM 59 129
FBpp0081601 RRM 234 303
FBpp0081601 RRM 565 628
FBpp0293226 RRM 59 129

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ011705 Culex pipiens CpipJ_CPIJ011705 I 0.761
GK14301 Drosophila willistoni FBgn0216307 I 0.951
GJ23846 Drosophila virilis FBgn0210941 I 0.941
GD20792 Drosophila simulans FBgn0192255 I 0.985
GM26253 Drosophila sechellia FBgn0181108 I 0.985
GL22228 Drosophila persimilis FBgn0159820 I 0.980
GI22600 Drosophila mojavensis FBgn0145328 I 0.937
GH19397 Drosophila grimshawi FBgn0126862 I 0.941
GG17367 Drosophila erecta FBgn0109594 I 0.990
GF16058 Drosophila ananassae FBgn0093080 I 0.976
GA21738-RA Drosophila pseudoobscura FBgn0081723 I 0.980
CPIJ011705 Culex quinquefasciatus CPIJ011705 I 0.761
AGAP001460 Anopheles gambiae AGAP001460 I 0.761
AAEL003670 Aedes aegypti AAEL003670 I 0.751
GE24772 Drosophila yakuba FBgn0241875 I 0.990