CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
rump
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0260010
T44421_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
rump
M288_0.6
Drosophila melanogaster
Sequence logo not available
GGAGG
RIP-chip
Cook et al.(2011)
34_15781475
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0081601
RRM
59
129
VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELV
FBpp0081601
RRM
234
303
VFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMT
FBpp0081601
RRM
565
628
IIIKNVPITCTWQTLRDKFREIGDVKFAEIRGNDVGVVRFFKERDAELAIALMDGSRLDGRNIK
FBpp0293226
RRM
59
129
VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELV
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ011705
Culex pipiens
CpipJ_CPIJ011705
I
0.761
GK14301
Drosophila willistoni
FBgn0216307
I
0.951
GJ23846
Drosophila virilis
FBgn0210941
I
0.941
GD20792
Drosophila simulans
FBgn0192255
I
0.985
GM26253
Drosophila sechellia
FBgn0181108
I
0.985
GL22228
Drosophila persimilis
FBgn0159820
I
0.980
GI22600
Drosophila mojavensis
FBgn0145328
I
0.937
GH19397
Drosophila grimshawi
FBgn0126862
I
0.941
GG17367
Drosophila erecta
FBgn0109594
I
0.990
GF16058
Drosophila ananassae
FBgn0093080
I
0.976
GA21738-RA
Drosophila pseudoobscura
FBgn0081723
I
0.980
CPIJ011705
Culex quinquefasciatus
CPIJ011705
I
0.761
AGAP001460
Anopheles gambiae
AGAP001460
I
0.761
AAEL003670
Aedes aegypti
AAEL003670
I
0.751
GE24772
Drosophila yakuba
FBgn0241875
I
0.990