CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GI22600
(
Drosophila mojavensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0145328
T43653_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
rump
M288_0.6
Drosophila melanogaster
Sequence logo not available
GGAGG
RIP-chip
Cook et al.(2011)
34_15781475
0.937
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0171817
RRM
62
132
VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDENGKARGCGIVEFKDPENVQKAMEKMNRYELNGRELV
FBpp0171817
RRM
233
302
VFVANLDYKVDSKKLKQVFKLAGKVQSVDLSLDKEGHSRGFAVVEYDHPVEAVQAISMLDRQMLYDRRMT
FBpp0171817
RRM
581
644
IIIKNVPLSCTWQTLRDKFRDVGDVKFAEIRGNDVGVVRFFKERDAELAIALMDGSRLDGRTIK
Links
Other
RRM
family RBPs
Other
Drosophila mojavensis
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GJ23846
Drosophila virilis
FBgn0210941
I
0.995
GH19397
Drosophila grimshawi
FBgn0126862
I
0.980
GA21738-RA
Drosophila pseudoobscura
FBgn0081723
I
0.951
GL22228
Drosophila persimilis
FBgn0159820
I
0.951
GK14301
Drosophila willistoni
FBgn0216307
I
0.946
GF16058
Drosophila ananassae
FBgn0093080
I
0.946
GG17367
Drosophila erecta
FBgn0109594
I
0.941
GE24772
Drosophila yakuba
FBgn0241875
I
0.941
rump
Drosophila melanogaster
FBgn0260010
D
0.937
GM26253
Drosophila sechellia
FBgn0181108
I
0.937
GD20792
Drosophila simulans
FBgn0192255
I
0.937
AGAP001460
Anopheles gambiae
AGAP001460
I
0.771
AAEL003670
Aedes aegypti
AAEL003670
I
0.766
CpipJ_CPIJ011705
Culex pipiens
CpipJ_CPIJ011705
I
0.756
CPIJ011705
Culex quinquefasciatus
CPIJ011705
I
0.756