B9I5V6_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0013s05190 T45639_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s05190.1 RRM 6 71

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK10346.1 Cannabis sativa PK10346.1 N 0.879
Cucsa.017340 Cucumis sativus Cucsa.017340 N 0.806
Cucsa.334810 Cucumis sativus Cucsa.334810 N 0.773
Glyma16g04290.1 Glycine max Glyma16g04290.1 N 0.746
mgf006334m Mimulus guttatus mgf006334m N 0.821
GRMZM2G172011 Zea mays GRMZM2G172011 N 0.721
Medtr7g102810 Medicago truncatula Medtr7g102810 N 0.765
MDP0000120510 Malus x domestica MDP0000120510 N 0.851
PDK_20s1386251g001 Phoenix dactylifera PDK_20s1386251g001 N 0.727
ppa009644m Prunus persica ppa009644m N 0.864
cassava25979.m1 Manihot esculenta cassava25979.m1 N 0.848
cassava23957.valid.m1 Manihot esculenta cassava23957.valid.m1 N 0.879
AT5G32450 Arabidopsis thaliana AT5G32450-TAIR-G N 0.791
XM_002868345.1 Arabidopsis lyrata fgenesh2_kg.7__3000__AT5G32450.1 N 0.791
GSVIVG00022464001 Vitis vinifera GSVIVG00022464001 N 0.776
LOC_Os03g53770 Oryza sativa LOC_Os03g53770 N 0.706
B9IPS4_POPTR Populus trichocarpa POPTR_0019s05350 N 0.896
SB01G008070 Sorghum bicolor Sb01g008070 N 0.721
30072.m000978 Ricinus communis 30072.m000978 N 0.779
cassava22591.valid.m1 Manihot esculenta cassava22591.valid.m1 N 0.848
cassava22592.valid.m1 Manihot esculenta cassava22592.valid.m1 N 0.848
ppa009902m Prunus persica ppa009902m N 0.864