e_gw.91.104.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.91.104.1 T50258_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF2
M352_0.6 		Homo sapiens AGSAGAGUA SELEX
Cook et al.(2011)
953_7543047 		0.732
SRSF2
M332_0.6 		Homo sapiens UGUUCSAGWU SELEX
Cook et al.(2011)
791_10094314 		0.732
SRSF2
M274_0.6 		Homo sapiens GUUCGAGUA SELEX
Cook et al.(2011)
244_7543047 		0.732
SRSF2
M070_0.6 		Homo sapiens GGAGWD RNAcompete
Ray et al.(2013)
RNCMPT00072 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.91.104.1 RRM 18 88

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF2 Homo sapiens ENSG00000161547 D 0.732
GE12283 Drosophila yakuba FBgn0230039 I 0.718
GK14626 Drosophila willistoni FBgn0216632 I 0.746
GJ16161 Drosophila virilis FBgn0203346 I 0.746
GD22120 Drosophila simulans FBgn0193531 I 0.746
GM26218 Drosophila sechellia FBgn0181073 I 0.746
GI17122 Drosophila mojavensis FBgn0139866 I 0.746
GH11678 Drosophila grimshawi FBgn0119158 I 0.746
GG10262 Drosophila erecta FBgn0102571 I 0.746
GF15672 Drosophila ananassae FBgn0092696 I 0.746
GA18884-RA Drosophila pseudoobscura FBgn0078884 I 0.746
SC35 Drosophila melanogaster FBgn0040286 I 0.746
srsf2 Xenopus tropicalis ENSXETG00000025271 I 0.746
SRSF2 Takifugu rubripes ENSTRUG00000018104 I 0.761
SRSF2 Takifugu rubripes ENSTRUG00000002362 I 0.761
SRSF2 Tetraodon nigroviridis ENSTNIG00000001280 I 0.761
SRSF2 Taeniopygia guttata ENSTGUG00000007799 I 0.732
AAH45229 Xenopus laevis AAH45229 I 0.746
ISCW001255 Ixodes scapularis ISCW001255 I 0.746
XP_785989.2 Strongylocentrotus purpuratus XP_785989.2 I 0.718
XP_002161458.1 Hydra magnipapillata XP_002161458.1 I 0.803
XP_001198099.1 Strongylocentrotus purpuratus XP_001198099.1 I 0.704
XP_001198082.1 Strongylocentrotus purpuratus XP_001198082.1 I 0.704
XP_001180605.1 Strongylocentrotus purpuratus XP_001180605.1 I 0.718
XP_001180179.1 Strongylocentrotus purpuratus XP_001180179.1 I 0.704
XP_001180144.1 Strongylocentrotus purpuratus XP_001180144.1 I 0.704
Ame_R006395 Ailuropoda melanoleuca Ame_R006395 I 0.704
gw1.5.1039.1 Lottia gigantea gw1.5.1039.1 I 0.746
fgenesh2_pg.scaffold_240000061 Branchiostoma floridae fgenesh2_pg.scaffold_240000061 I 0.789
estExt_Genewise1Plus.C_1270032 Capitella teleta estExt_Genewise1Plus.C_1270032 I 0.718
estExt_Genewise1.C_sca_50520 Lottia gigantea estExt_Genewise1.C_sca_50520 I 0.732
estExt_fgenesh1_pm.C_490002 Capitella teleta estExt_fgenesh1_pm.C_490002 I 0.732
e_gw.736.13.1 Nematostella vectensis e_gw.736.13.1 I 1.000
e_gw1.120.82.1 Daphnia pulex e_gw1.120.82.1 I 0.718
97732 Helobdella robusta 97732 I 0.704
SRSF2 Tupaia belangeri ENSTBEG00000014339 I 0.732
Sfrs2 Rattus norvegicus ENSRNOG00000000248 I 0.732
srsf2 Danio rerio ENSDARG00000057484 I 0.761
SRSF2 Danio rerio ENSDARG00000010906 I 0.746
ENSCSAVG00000009199 Ciona savignyi ENSCSAVG00000009199 I 0.746
LOC100409845 Callithrix jacchus ENSCJAG00000013412 I 0.732
ENSCING00000004198 Ciona intestinalis ENSCING00000004198 I 0.746
SRSF2 Choloepus hoffmanni ENSCHOG00000014019 I 0.718
SRSF2 Canis familiaris ENSCAFG00000005147 I 0.732
SFRS2_BOVIN Bos taurus ENSBTAG00000018258 I 0.732
SRSF2 Anolis carolinensis ENSACAG00000008553 I 0.732
CPIJ007047 Culex quinquefasciatus CPIJ007047 I 0.732
AGAP009742 Anopheles gambiae AGAP009742 I 0.746
AAEL010340 Aedes aegypti AAEL010340 I 0.732
DGIL_AUG5s1074g3t1 Acyrtosiphon pisum DGIL_AUG5s1074g3t1 I 0.761
amel4_ncbi_hmm3241 Tribolium castaneum amel4_ncbi_hmm3241 I 0.775
amel4_ncbi_hmm3241 Apis mellifera amel4_ncbi_hmm3241 I 0.775
SRSF2 Dasypus novemcinctus ENSDNOG00000000439 I 0.732
Srsf2 Dipodomys ordii ENSDORG00000014460 I 0.732
SRSF2 Gasterosteus aculeatus ENSGACG00000003105 I 0.761
SRSF2 Pteropus vampyrus ENSPVAG00000014264 I 0.732
SFRS2_PANTR Pan troglodytes ENSPTRG00000009692 I 0.732
ENSPPYG00000008668 Pongo pygmaeus ENSPPYG00000008668 I 0.732
Q9DGK5_ORYLA Oryzias latipes ENSORLG00000018688 I 0.746
SRSF2 Oryzias latipes ENSORLG00000001230 I 0.775
SRSF2 Oryctolagus cuniculus ENSOCUG00000021840 I 0.704
SRSF2 Ornithorhynchus anatinus ENSOANG00000002695 I 0.732
Srsf2 Mus musculus ENSMUSG00000034120 I 0.732
SRSF2 Monodelphis domestica ENSMODG00000001575 I 0.732
LOC707883 Macaca mulatta ENSMMUG00000022413 I 0.732
SRSF2 Myotis lucifugus ENSMLUG00000009759 I 0.732
SRSF2 Microcebus murinus ENSMICG00000016956 I 0.732
SRSF2 Macropus eugenii ENSMEUG00000016745 I 0.732
SRSF2 Gorilla gorilla ENSGGOG00000014378 I 0.732
SRSF2 Gasterosteus aculeatus ENSGACG00000014884 I 0.761
CpipJ_CPIJ007047 Culex pipiens CpipJ_CPIJ007047 I 0.732