fgenesh2_pg.scaffold_240000061 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_240000061 T52237_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF2
M352_0.6 		Homo sapiens AGSAGAGUA SELEX
Cook et al.(2011)
953_7543047 		0.817
SRSF2
M332_0.6 		Homo sapiens UGUUCSAGWU SELEX
Cook et al.(2011)
791_10094314 		0.817
SRSF2
M274_0.6 		Homo sapiens GUUCGAGUA SELEX
Cook et al.(2011)
244_7543047 		0.817
SRSF2
M070_0.6 		Homo sapiens GGAGWD RNAcompete
Ray et al.(2013)
RNCMPT00072 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_240000061 RRM 16 86

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm3241 Apis mellifera amel4_ncbi_hmm3241 I 0.887
DGIL_AUG5s1074g3t1 Acyrtosiphon pisum DGIL_AUG5s1074g3t1 I 0.887
amel4_ncbi_hmm3241 Tribolium castaneum amel4_ncbi_hmm3241 I 0.887
AGAP009742 Anopheles gambiae AGAP009742 I 0.859
GG10262 Drosophila erecta FBgn0102571 I 0.859
SC35 Drosophila melanogaster FBgn0040286 I 0.859
GF15672 Drosophila ananassae FBgn0092696 I 0.859
GH11678 Drosophila grimshawi FBgn0119158 I 0.859
GA18884-RA Drosophila pseudoobscura FBgn0078884 I 0.859
ISCW001255 Ixodes scapularis ISCW001255 I 0.859
GJ16161 Drosophila virilis FBgn0203346 I 0.859
GD22120 Drosophila simulans FBgn0193531 I 0.859
GM26218 Drosophila sechellia FBgn0181073 I 0.859
GK14626 Drosophila willistoni FBgn0216632 I 0.859
GI17122 Drosophila mojavensis FBgn0139866 I 0.859
SRSF2 Danio rerio ENSDARG00000010906 I 0.845
CPIJ007047 Culex quinquefasciatus CPIJ007047 I 0.845
AAEL010340 Aedes aegypti AAEL010340 I 0.845
CpipJ_CPIJ007047 Culex pipiens CpipJ_CPIJ007047 I 0.845
srsf2 Danio rerio ENSDARG00000057484 I 0.831
SRSF2 Tetraodon nigroviridis ENSTNIG00000001280 I 0.831
SRSF2 Gasterosteus aculeatus ENSGACG00000003105 I 0.831
SRSF2 Gasterosteus aculeatus ENSGACG00000014884 I 0.831
AAH45229 Xenopus laevis AAH45229 I 0.831
SRSF2 Takifugu rubripes ENSTRUG00000002362 I 0.831
SRSF2 Takifugu rubripes ENSTRUG00000018104 I 0.831
GE12283 Drosophila yakuba FBgn0230039 I 0.831
srsf2 Xenopus tropicalis ENSXETG00000025271 I 0.831
Q9DGK5_ORYLA Oryzias latipes ENSORLG00000018688 I 0.817
SRSF2 Oryzias latipes ENSORLG00000001230 I 0.817
SRSF2 Ornithorhynchus anatinus ENSOANG00000002695 I 0.817
SRSF2 Monodelphis domestica ENSMODG00000001575 I 0.817
Srsf2 Mus musculus ENSMUSG00000034120 I 0.817
ENSPPYG00000008668 Pongo pygmaeus ENSPPYG00000008668 I 0.817
LOC707883 Macaca mulatta ENSMMUG00000022413 I 0.817
SRSF2 Taeniopygia guttata ENSTGUG00000007799 I 0.817
e_gw1.120.82.1 Daphnia pulex e_gw1.120.82.1 I 0.817
SRSF2 Tupaia belangeri ENSTBEG00000014339 I 0.817
Sfrs2 Rattus norvegicus ENSRNOG00000000248 I 0.817
SRSF2 Pteropus vampyrus ENSPVAG00000014264 I 0.817
SFRS2_PANTR Pan troglodytes ENSPTRG00000009692 I 0.817
SRSF2 Myotis lucifugus ENSMLUG00000009759 I 0.817
SRSF2 Gorilla gorilla ENSGGOG00000014378 I 0.817
SRSF2 Homo sapiens ENSG00000161547 D 0.817
SRSF2 Dasypus novemcinctus ENSDNOG00000000439 I 0.817
SRSF2 Anolis carolinensis ENSACAG00000008553 I 0.817
Srsf2 Dipodomys ordii ENSDORG00000014460 I 0.817
LOC100409845 Callithrix jacchus ENSCJAG00000013412 I 0.817
SRSF2 Macropus eugenii ENSMEUG00000016745 I 0.817
SRSF2 Microcebus murinus ENSMICG00000016956 I 0.817
SFRS2_BOVIN Bos taurus ENSBTAG00000018258 I 0.817
SRSF2 Canis familiaris ENSCAFG00000005147 I 0.817
estExt_Genewise1.C_sca_50520 Lottia gigantea estExt_Genewise1.C_sca_50520 I 0.803
SRSF2 Choloepus hoffmanni ENSCHOG00000014019 I 0.803
ENSCSAVG00000009199 Ciona savignyi ENSCSAVG00000009199 I 0.803
XP_001180605.1 Strongylocentrotus purpuratus XP_001180605.1 I 0.789
estExt_fgenesh1_pm.C_490002 Capitella teleta estExt_fgenesh1_pm.C_490002 I 0.789
e_gw.91.104.1 Nematostella vectensis e_gw.91.104.1 I 0.789
e_gw.736.13.1 Nematostella vectensis e_gw.736.13.1 I 0.789
Ame_R006395 Ailuropoda melanoleuca Ame_R006395 I 0.789
XP_785989.2 Strongylocentrotus purpuratus XP_785989.2 I 0.789
ENSCING00000004198 Ciona intestinalis ENSCING00000004198 I 0.789
XP_001198082.1 Strongylocentrotus purpuratus XP_001198082.1 I 0.775
XP_001180144.1 Strongylocentrotus purpuratus XP_001180144.1 I 0.775
SRSF2 Meleagris gallopavo ENSMGAG00000004083 I 0.775
gw1.5.1039.1 Lottia gigantea gw1.5.1039.1 I 0.775
XP_001198099.1 Strongylocentrotus purpuratus XP_001198099.1 I 0.775
XP_001180179.1 Strongylocentrotus purpuratus XP_001180179.1 I 0.775
SRSF2 Oryctolagus cuniculus ENSOCUG00000021840 I 0.761
SRSF2 Erinaceus europaeus ENSEEUG00000009656 N 0.746
SRSF2 Sus scrofa ENSSSCG00000012212 I 0.746
97732 Helobdella robusta 97732 I 0.746
LOC100407351 Callithrix jacchus ENSCJAG00000004211 I 0.732
estExt_Genewise1Plus.C_1270032 Capitella teleta estExt_Genewise1Plus.C_1270032 I 0.732
SRSF2 Loxodonta africana ENSLAFG00000007469 I 0.732
XP_002161458.1 Hydra magnipapillata XP_002161458.1 I 0.718
ENSG00000180771 Homo sapiens ENSG00000180771 I 0.718
ENSMMUG00000007639 Macaca mulatta ENSMMUG00000007639 I 0.718
ENSPTRG00000034554 Pan troglodytes ENSPTRG00000034554 I 0.704