CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gwEuk.20.430.1
(
Ostreococcus lucimarinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gwEuk.20.430.1
T50270_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gwEuk.20.430.1
RRM
36
106
LYVGNVSFYTTENQMHALFRSVGVVRAIVVGLDSARRTPCGFAFVEYETRADAERCVRYLNGTKLDDREIR
Links
Other
RRM
family RBPs
Other
Ostreococcus lucimarinus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG1316
Drosophila melanogaster
FBgn0035526
N
0.000
GJ12844
Drosophila virilis
FBgn0200079
N
0.000
GD13832
Drosophila simulans
FBgn0185529
N
0.000
GM14647
Drosophila sechellia
FBgn0169568
N
0.000
GL17872
Drosophila persimilis
FBgn0155475
N
0.000
GI16592
Drosophila mojavensis
FBgn0139340
N
0.000
GH15941
Drosophila grimshawi
FBgn0123412
N
0.000
GG15216
Drosophila erecta
FBgn0107468
N
0.000
GF25059
Drosophila ananassae
FBgn0102051
N
0.000
GA12086-RA
Drosophila pseudoobscura
FBgn0072134
N
0.000
GK10557
Drosophila willistoni
FBgn0212572
N
0.000