CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL17872
(
Drosophila persimilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0155475
T43720_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0181979
RRM
34
97
NKAHTEDDFREAFSAYGDIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDR
FBpp0181979
RRM
127
186
VIPKTATEDDIRDEFAQWGEVESVTIVREKNNGNPKGFGYVRFTKFYYAAVAFENCSPKY
FBpp0181979
RRM
269
332
VSNCVNQDQLWRLFDIIPGLDYCQIMREHGPRTNEAMVVYDNPEAAIYAKDKLHGLEYPMGERI
FBpp0181979
RRM
384
443
LSANLPHSILKNIFSCWKGLIDVYLLPNKNCGYVKYAECESAQRAIHVLNGAEICGTKIK
Links
Other
RRM
family RBPs
Other
Drosophila persimilis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA12086-RA
Drosophila pseudoobscura
FBgn0072134
N
1.000
GK10557
Drosophila willistoni
FBgn0212572
N
0.956
GJ12844
Drosophila virilis
FBgn0200079
N
0.932
GI16592
Drosophila mojavensis
FBgn0139340
N
0.932
GH15941
Drosophila grimshawi
FBgn0123412
N
0.924
GG15216
Drosophila erecta
FBgn0107468
N
0.921
GE21435
Drosophila yakuba
FBgn0068447
N
0.921
GD13832
Drosophila simulans
FBgn0185529
N
0.921
CG1316
Drosophila melanogaster
FBgn0035526
N
0.921
GM14647
Drosophila sechellia
FBgn0169568
N
0.921
GF25059
Drosophila ananassae
FBgn0102051
N
0.889