estExt_Genewise1.C_sca_50520 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_sca_50520 T51332_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF2
M352_0.6 		Homo sapiens AGSAGAGUA SELEX
Cook et al.(2011)
953_7543047 		0.803
SRSF2
M332_0.6 		Homo sapiens UGUUCSAGWU SELEX
Cook et al.(2011)
791_10094314 		0.803
SRSF2
M274_0.6 		Homo sapiens GUUCGAGUA SELEX
Cook et al.(2011)
244_7543047 		0.803
SRSF2
M070_0.6 		Homo sapiens GGAGWD RNAcompete
Ray et al.(2013)
RNCMPT00072 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_sca_50520 RRM 17 87

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF2 Homo sapiens ENSG00000161547 D 0.803
AAH45229 Xenopus laevis AAH45229 I 0.817
GJ16161 Drosophila virilis FBgn0203346 I 0.789
GD22120 Drosophila simulans FBgn0193531 I 0.789
GM26218 Drosophila sechellia FBgn0181073 I 0.789
GI17122 Drosophila mojavensis FBgn0139866 I 0.789
GH11678 Drosophila grimshawi FBgn0119158 I 0.789
GG10262 Drosophila erecta FBgn0102571 I 0.789
GF15672 Drosophila ananassae FBgn0092696 I 0.789
GA18884-RA Drosophila pseudoobscura FBgn0078884 I 0.789
SC35 Drosophila melanogaster FBgn0040286 I 0.789
srsf2 Xenopus tropicalis ENSXETG00000025271 I 0.817
SRSF2 Takifugu rubripes ENSTRUG00000018104 I 0.817
SRSF2 Takifugu rubripes ENSTRUG00000002362 I 0.817
SRSF2 Tetraodon nigroviridis ENSTNIG00000001280 I 0.817
SRSF2 Taeniopygia guttata ENSTGUG00000007799 I 0.803
SRSF2 Tupaia belangeri ENSTBEG00000014339 I 0.803
SRSF2 Sus scrofa ENSSSCG00000012212 I 0.732
GK14626 Drosophila willistoni FBgn0216632 I 0.789
GE12283 Drosophila yakuba FBgn0230039 I 0.761
XP_785989.2 Strongylocentrotus purpuratus XP_785989.2 I 0.761
XP_002161458.1 Hydra magnipapillata XP_002161458.1 I 0.704
XP_001198099.1 Strongylocentrotus purpuratus XP_001198099.1 I 0.746
XP_001198082.1 Strongylocentrotus purpuratus XP_001198082.1 I 0.746
XP_001180605.1 Strongylocentrotus purpuratus XP_001180605.1 I 0.761
XP_001180179.1 Strongylocentrotus purpuratus XP_001180179.1 I 0.746
XP_001180144.1 Strongylocentrotus purpuratus XP_001180144.1 I 0.746
Ame_R006395 Ailuropoda melanoleuca Ame_R006395 I 0.761
gw1.5.1039.1 Lottia gigantea gw1.5.1039.1 I 0.845
fgenesh2_pg.scaffold_240000061 Branchiostoma floridae fgenesh2_pg.scaffold_240000061 I 0.803
estExt_Genewise1Plus.C_1270032 Capitella teleta estExt_Genewise1Plus.C_1270032 I 0.718
estExt_fgenesh1_pm.C_490002 Capitella teleta estExt_fgenesh1_pm.C_490002 I 0.817
e_gw.91.104.1 Nematostella vectensis e_gw.91.104.1 I 0.732
e_gw.736.13.1 Nematostella vectensis e_gw.736.13.1 I 0.732
e_gw1.120.82.1 Daphnia pulex e_gw1.120.82.1 I 0.803
97732 Helobdella robusta 97732 I 0.746
ISCW001255 Ixodes scapularis ISCW001255 I 0.761
Sfrs2 Rattus norvegicus ENSRNOG00000000248 I 0.803
SRSF2 Pteropus vampyrus ENSPVAG00000014264 I 0.803
srsf2 Danio rerio ENSDARG00000057484 I 0.817
SRSF2 Danio rerio ENSDARG00000010906 I 0.817
ENSCSAVG00000009199 Ciona savignyi ENSCSAVG00000009199 I 0.831
LOC100409845 Callithrix jacchus ENSCJAG00000013412 I 0.803
LOC100407351 Callithrix jacchus ENSCJAG00000004211 I 0.704
ENSCING00000004198 Ciona intestinalis ENSCING00000004198 I 0.803
SRSF2 Choloepus hoffmanni ENSCHOG00000014019 I 0.789
SRSF2 Canis familiaris ENSCAFG00000005147 I 0.803
SFRS2_BOVIN Bos taurus ENSBTAG00000018258 I 0.803
SRSF2 Anolis carolinensis ENSACAG00000008553 I 0.803
CPIJ007047 Culex quinquefasciatus CPIJ007047 I 0.775
AGAP009742 Anopheles gambiae AGAP009742 I 0.789
AAEL010340 Aedes aegypti AAEL010340 I 0.775
DGIL_AUG5s1074g3t1 Acyrtosiphon pisum DGIL_AUG5s1074g3t1 I 0.817
amel4_ncbi_hmm3241 Tribolium castaneum amel4_ncbi_hmm3241 I 0.803
amel4_ncbi_hmm3241 Apis mellifera amel4_ncbi_hmm3241 I 0.803
SRSF2 Dasypus novemcinctus ENSDNOG00000000439 I 0.803
Srsf2 Dipodomys ordii ENSDORG00000014460 I 0.803
CpipJ_CPIJ007047 Culex pipiens CpipJ_CPIJ007047 I 0.775
SFRS2_PANTR Pan troglodytes ENSPTRG00000009692 I 0.803
ENSPPYG00000008668 Pongo pygmaeus ENSPPYG00000008668 I 0.803
Q9DGK5_ORYLA Oryzias latipes ENSORLG00000018688 I 0.803
SRSF2 Oryzias latipes ENSORLG00000001230 I 0.789
SRSF2 Oryctolagus cuniculus ENSOCUG00000021840 I 0.732
SRSF2 Ornithorhynchus anatinus ENSOANG00000002695 I 0.803
Srsf2 Mus musculus ENSMUSG00000034120 I 0.803
SRSF2 Monodelphis domestica ENSMODG00000001575 I 0.803
LOC707883 Macaca mulatta ENSMMUG00000022413 I 0.803
SRSF2 Myotis lucifugus ENSMLUG00000009759 I 0.803
SRSF2 Microcebus murinus ENSMICG00000016956 I 0.803
SRSF2 Meleagris gallopavo ENSMGAG00000004083 I 0.746
SRSF2 Macropus eugenii ENSMEUG00000016745 I 0.803
SRSF2 Gorilla gorilla ENSGGOG00000014378 I 0.803
SRSF2 Gasterosteus aculeatus ENSGACG00000014884 I 0.817
SRSF2 Gasterosteus aculeatus ENSGACG00000003105 I 0.817
SRSF2 Erinaceus europaeus ENSEEUG00000009656 N 0.761