CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
mgf017214m
(
Mimulus guttatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
mgf017214m
T53762_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
AT1G76460-TAIR-G
M239_0.6
Arabidopsis thaliana
DGWGUGD
RNAcompete
Ray et al.(2013)
RNCMPT00284
0.897
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf017214m
RRM
39
106
VFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRR
Links
Other
RRM
family RBPs
Other
Mimulus guttatus
RBPs
118 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.000
MDP0000183174
Malus x domestica
MDP0000183174
N
0.000
MDP0000234284
Malus x domestica
MDP0000234284
N
0.000
MDP0000441109
Malus x domestica
MDP0000441109
N
0.000