mgf017214m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf017214m T53762_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.897
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf017214m RRM 39 106

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.985
PK21213.1 Cannabis sativa PK21213.1 I 0.971
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.956
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.956
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.956
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.941
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.926
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.926
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.912
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.897
ppa009716m Prunus persica ppa009716m I 0.897
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.897
ppa009964m Prunus persica ppa009964m I 0.897
CU179634_3 Medicago truncatula CU179634_3 I 0.897
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.882
MDP0000138486 Malus x domestica MDP0000138486 I 0.882
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.868
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.868
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.868
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.868
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.868
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.868
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.855
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.855
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.853
MDP0000184420 Malus x domestica MDP0000184420 I 0.853
MDP0000744398 Malus x domestica MDP0000744398 I 0.853
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.853
MDP0000284454 Malus x domestica MDP0000284454 I 0.853
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.853
MDP0000548950 Malus x domestica MDP0000548950 I 0.853
MDP0000488395 Malus x domestica MDP0000488395 I 0.853
PK15672.1 Cannabis sativa PK15672.1 I 0.841
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.841
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.838
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.838
30076.m004440 Ricinus communis 30076.m004440 I 0.838
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.838
ppa016222m Prunus persica ppa016222m I 0.838
PK14266.1 Cannabis sativa PK14266.1 I 0.838
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.826
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.826
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.826
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.824
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.824
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.824
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.824
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.824
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.812
MDP0000134468 Malus x domestica MDP0000134468 I 0.809
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.809
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.809
29908.m006046 Ricinus communis 29908.m006046 I 0.809
ppa019392m Prunus persica ppa019392m I 0.797
MDP0000118777 Malus x domestica MDP0000118777 I 0.797
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.797
MDP0000857317 Malus x domestica MDP0000857317 I 0.797
ppa018926m Prunus persica ppa018926m I 0.797
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.794
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.794
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.794
ppa018603m Prunus persica ppa018603m I 0.783
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.783
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.779
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.779
MDP0000233609 Malus x domestica MDP0000233609 I 0.779
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.779
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.768
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.768
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.768
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.765
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.765
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.765
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.765
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.765
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.765
SB04G030020 Sorghum bicolor Sb04g030020 I 0.765
SB03G041530 Sorghum bicolor Sb03g041530 I 0.765
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.765
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.754
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.754
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.754
MDP0000181802 Malus x domestica MDP0000181802 N 0.750
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.750
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.750
30170.m013735 Ricinus communis 30170.m013735 I 0.750
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.750
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.750
MDP0000271231 Malus x domestica MDP0000271231 N 0.750
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.750
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.739
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.735
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.735
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.735
mgf002440m Mimulus guttatus mgf002440m N 0.735
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.735
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.735
SB03G046430 Sorghum bicolor Sb03g046430 N 0.735
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.735
ppa009564m Prunus persica ppa009564m I 0.735
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.735
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725
mgf016660m Mimulus guttatus mgf016660m I 0.721
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.721
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.721
29983.m003293 Ricinus communis 29983.m003293 I 0.721
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.721
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.721
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.706
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.706
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.706
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.706
29923.m000811 Ricinus communis 29923.m000811 I 0.706
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.706
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.706