CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCBI_GNO_7600086
(
Daphnia pulex
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCBI_GNO_7600086
T53833_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCBI_GNO_7600086
RRM
38
107
LFVGQIPRNLEEADLRPMFEEFGKIYELTVLKDKLTGMHKGCAFLTYCTRESAINAQNALHEKRTLPGMN
NCBI_GNO_7600086
RRM
126
191
LFVGMLSKQQTDEDVRQLFLPYGTIEECTILRGPDGQSKGCAFVKFSTHAEAQTAINSLHGSQTMP
Links
Other
RRM
family RBPs
Other
Daphnia pulex
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.748
ENSPPYG00000009118
Pongo pygmaeus
ENSPPYG00000009118
I
0.784
CELF3
Pan troglodytes
ENSPTRG00000001293
I
0.755
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.705
CELF6
Canis familiaris
ENSCAFG00000017695
N
0.757
Celf5
Mus musculus
ENSMUSG00000034818
N
0.741
CELF4
Pan troglodytes
ENSPTRG00000009982
N
0.784
Brunol5
Rattus norvegicus
ENSRNOG00000004695
N
0.741