CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GRMZM2G003527
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G003527
T53991_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G003527_P01
RRM
296
358
EDEVASECARYGTVSRVLIFEITQAYFPSDEAVRIFIQFERAEEATKAMVDLQGRFFGGRVVQ
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK13606.1
Cannabis sativa
PK13606.1
N
0.746
PDK_20s1603131g002
Phoenix dactylifera
PDK_20s1603131g002
N
0.766
MDP0000162585
Malus x domestica
MDP0000162585
N
0.797
chr4.CM0229.230.nc
Lotus japonicus
chr4.CM0229.230.nc
N
0.778
Medtr4g115110
Medicago truncatula
Medtr4g115110
N
0.762
GRMZM2G145034
Zea mays
GRMZM2G145034
N
0.922
Glyma20g02910.1
Glycine max
Glyma20g02910.1
N
0.762
Glyma07g35050.1
Glycine max
Glyma07g35050.1
N
0.746
estExt_fgenesh1_pg.C_2810007
Physcomitrella patens
estExt_fgenesh1_pg.C_2810007
N
0.719
Cucsa.048210
Cucumis sativus
Cucsa.048210
N
0.762
cassava31871.valid.m1
Manihot esculenta
cassava31871.valid.m1
N
0.703
cassava24157.valid.m1
Manihot esculenta
cassava24157.valid.m1
N
0.714
30075.m001186
Ricinus communis
30075.m001186
N
0.766
SB10G003990
Sorghum bicolor
Sb10g003990
N
0.938
B9GGD6_POPTR
Populus trichocarpa
POPTR_0001s38150
N
0.734
LOC_Os01g34190
Oryza sativa
LOC_Os01g34190
N
0.812
GSVIVG00021628001
Vitis vinifera
GSVIVG00021628001
N
0.781
BGIOSIBCE002155
Oryza indica
BGIOSIBCE002155
N
0.812
ppa007087m
Prunus persica
ppa007087m
N
0.781