CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PredSwiss_ASS2010_2420.1
(
Pneumocystis carinii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PredSwiss_ASS2010_2420.1
T54637_0.6
Pneumocystis Genome Project (2010-Oct-5)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PredSwiss_ASS2010_2420.1
RRM
15
85
IYVGNLDERTTDAILWELFLQCGPVVNVHLPKDRVSQTHQGFGFCEFLTIEDAEYACRIMNQIKLYGKPIR
PredSwiss_ASS2010_2420.1
RRM
103
173
LFVGNLDPLVNEKVLYDTFSIFGMLVAPPKIARDDSGQSKCFGFISFDSFEAADAAIEGMNNQFLMNKSIT
Links
Other
RRM
family RBPs
Other
Pneumocystis carinii
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSDORG00000015663
Dipodomys ordii
ENSDORG00000015663
N
0.000
UNKL
Felis catus
ENSFCAG00000010643
N
0.000
UNKL
Myotis lucifugus
ENSMLUG00000011207
N
0.000
UNKL
Procavia capensis
ENSPCAG00000017060
N
0.000