CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00001369001
(
Vitis vinifera
)
CCCH ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1)
IPR000571
IPR018111
GSVIVG00001369001
T00167_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00001369001
CCCH ZF
37
61
SKSKPCTKFFSTSGCPFGEGCHFLH
GSVIVT00001369001
KH
118
180
TAKISVDASLAGAIIGKGGVNSKQICRLTGVKLSIKEHESDPNQRNIELEGTFDQIKQASAMV
GSVIVT00001369001
CCCH ZF
207
232
FKTKMCDNFAKGSCTFGDRCHFAHGA
Links
Other
CCCH ZF,KH
family RBPs
Other
Vitis vinifera
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
2610027L16Rik
Dipodomys ordii
ENSDORG00000012287
N
0.000