GSVIVG00001369001 (Vitis vinifera)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GSVIVG00001369001 T00167_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00001369001 CCCH ZF 37 61
GSVIVT00001369001 KH 118 180
GSVIVT00001369001 CCCH ZF 207 232

Links

Other CCCH ZF,KH family RBPs
Other Vitis vinifera RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.921
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.895
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.833
AT3G12130 Arabidopsis thaliana AT3G12130-TAIR-G N 0.816
AT5G06770 Arabidopsis thaliana AT5G06770-TAIR-G N 0.789
XM_002873232.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000515 N 0.789
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.784
B9HAC6_POPTR Populus trichocarpa POPTR_0006s20620 N 0.784
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.759
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.733
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.724
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.724
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.716
MDP0000263392 Malus x domestica MDP0000263392 N 0.716
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.707
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.707