CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000020956
(
Callithrix jacchus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSCJAG00000020956
T00467_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000038981
CCCH ZF
115
141
KDRANCPFYSKTGACRFGDRCSRKHNF
ENSCJAP00000038981
RRM
188
246
YEDVLPEFKNVGKVIQFKVSRNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQ
ENSCJAP00000038981
CCCH ZF
255
280
WKMAICGLFEIQQCPRGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Callithrix jacchus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tbg972.10.7420
Trypanosoma brucei
Tbg972.10.7420
N
0.000
Tc00.1047053507639.20
Trypanosoma cruzi
Tc00.1047053507639.20
N
0.000