CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Tc00.1047053507639.20
(
Trypanosoma cruzi
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Tc00.1047053507639.20
T13047_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Tc00.1047053507639.20
CCHC ZF
18
35
STCHRCGETGHFARECPN
Tc00.1047053507639.20
CCHC ZF
44
61
RACYNCGQPGHLSRECPT
Tc00.1047053507639.20
CCHC ZF
70
87
RACYNCGQPGHLSRECPT
Tc00.1047053507639.20
CCHC ZF
96
113
RACYNCGQPGHLSRECPT
Tc00.1047053507639.20
CCHC ZF
122
139
RACYNCGRMGHLSHECPN
Tc00.1047053507639.20
CCHC ZF
151
168
GACYHCQQEGHLARDCPN
Tc00.1047053507639.20
CCHC ZF
175
192
RACYNCGQTGHISRACPV
Links
Other
CCHC ZF
family RBPs
Other
Trypanosoma cruzi
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TvY486_1006020
Trypanosoma vivax
TvY486_1006020
N
0.810
Tbg972.10.7420
Trypanosoma brucei
Tbg972.10.7420
N
0.802