CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Tbg972.10.7420
(
Trypanosoma brucei
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Tbg972.10.7420
T13037_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Tbg972.10.7420
CCHC ZF
17
31
NNCHRCGQPGHFARE
Tbg972.10.7420
CCHC ZF
44
61
RACYTCGQPDHLSRDCPS
Tbg972.10.7420
CCHC ZF
72
89
RACYNCGQPGHFSRECPN
Tbg972.10.7420
CCHC ZF
104
121
RACYNCGQPGHFSRECPN
Tbg972.10.7420
CCHC ZF
136
153
RACYNCGQPGHFSRECPN
Tbg972.10.7420
CCHC ZF
163
180
RACYHCQQEGHIARECPN
Tbg972.10.7420
CCHC ZF
196
213
RACFNCGQPGHLSRACPV
Links
Other
CCHC ZF
family RBPs
Other
Trypanosoma brucei
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tc00.1047053507639.20
Trypanosoma cruzi
Tc00.1047053507639.20
N
0.802
TvY486_1006020
Trypanosoma vivax
TvY486_1006020
N
0.746