CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gw1.24.612.1
(
Selaginella moellendorfii
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
e_gw1.24.612.1
T00871_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.24.612.1
CCCH ZF
138
157
KPCLYFARGYCKHGSACRSS
e_gw1.24.612.1
RRM
281
341
ESGFSEEDVTTHFSSFGPVQDVRIPYQQKRMFGFVTFTYSETVRTILAEGNPHYICGARVL
Links
Other
CCCH ZF,RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_210070
Melampsora laricis populina
estExt_Genewise1Plus.C_210070
N
0.000
e_gw1.3.686.1
Sporobolomyces roseus
e_gw1.3.686.1
N
0.000
PGTG_15719
Puccinia graminis
PGTG_15719
N
0.000
PTTG_05083
Puccinia triticina
PTTG_05083
N
0.000