CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.3.686.1
(
Sporobolomyces roseus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.3.686.1
T49981_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.3.686.1
RRM
188
257
LRVTNLSEDARDDDLWDLFGRFGKINRIYVGKDQETGLCKGFGFVSFESKADAETAMKKVHGLPYDHLIL
Links
Other
RRM
family RBPs
Other
Sporobolomyces roseus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_18170
Puccinia graminis
PGTG_18170
N
0.761
PGTG_15719
Puccinia graminis
PGTG_15719
N
0.761
estExt_Genewise1Plus.C_210070
Melampsora laricis populina
estExt_Genewise1Plus.C_210070
N
0.761
PTTG_05083
Puccinia triticina
PTTG_05083
N
0.746