CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_210070
(
Melampsora laricis populina
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_210070
T51420_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_210070
RRM
217
285
LRVTNLSEDVQENDLWDLFARFGKISRIYVGKDQETGLCKGFAFVSFEDRLEAERAMKKINGLPYDHLI
Links
Other
RRM
family RBPs
Other
Melampsora laricis populina
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_15719
Puccinia graminis
PGTG_15719
N
0.942
PGTG_18170
Puccinia graminis
PGTG_18170
N
0.942
PTTG_05083
Puccinia triticina
PTTG_05083
N
0.928
e_gw1.3.686.1
Sporobolomyces roseus
e_gw1.3.686.1
N
0.761