CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDAG_08863
(
Verticillium dahliae
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
VDAG_08863
T01704_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDAG_08863T0
CCCH ZF
96
121
PKTVVCIFFKKGNCEKGKKCKFSHNV
Links
Other
CCCH ZF
family RBPs
Other
Verticillium dahliae
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava29351.valid.m1
Manihot esculenta
cassava29351.valid.m1
N
0.000
cassava29352.valid.m1
Manihot esculenta
cassava29352.valid.m1
N
0.000
cassava43399.valid.m1
Manihot esculenta
cassava43399.valid.m1
N
0.000
Glyma05g00400.1
Glycine max
Glyma05g00400.1
N
0.000
Glyma17g08630.1
Glycine max
Glyma17g08630.1
N
0.000