cassava29352.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava29352.valid.m1 T49261_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29352.valid.m1 RRM 42 112

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 1.000
cassava43399.valid.m1 Manihot esculenta cassava43399.valid.m1 N 0.930
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.915
30138.m003973 Ricinus communis 30138.m003973 N 0.901
Cucsa.198260 Cucumis sativus Cucsa.198260 N 0.887
ppa010113m Prunus persica ppa010113m N 0.845
MDP0000635271 Malus x domestica MDP0000635271 N 0.845
B9I2R7_POPTR Populus trichocarpa POPTR_0012s05870 N 0.845
PK15111.1 Cannabis sativa PK15111.1 N 0.831
mgf007732m Mimulus guttatus mgf007732m N 0.831
XM_002864670.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002097 N 0.817
mgf012875m Mimulus guttatus mgf012875m N 0.817
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.817
mgf016144m Mimulus guttatus mgf016144m N 0.817
mgf014059m Mimulus guttatus mgf014059m N 0.817
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.817
GR-RBP3 Arabidopsis thaliana AT5G61030-TAIR-G N 0.803
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.803
MDP0000302917 Malus x domestica MDP0000302917 N 0.775
chr1.CM0410.300.nd Lotus japonicus chr1.CM0410.300.nd N 0.775
MDP0000255642 Malus x domestica MDP0000255642 N 0.775
LjT12A09.50.nd Lotus japonicus LjT12A09.50.nd N 0.761
PDK_20s1328241g004 Phoenix dactylifera PDK_20s1328241g004 N 0.761
Medtr3g036670 Medicago truncatula Medtr3g036670 N 0.746
GRMZM2G150521 Zea mays GRMZM2G150521 N 0.746
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.746
SB08G015580 Sorghum bicolor Sb08g015580 N 0.746
LOC_Os10g17454 Oryza sativa LOC_Os10g17454 N 0.746
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.746
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.732
XM_002887486.1 Arabidopsis lyrata fgenesh2_kg.2__1690__AT1G74230.1 N 0.732
GR-RBP5 Arabidopsis thaliana AT1G74230-TAIR-G N 0.732
chr4.CM0500.260.nd Lotus japonicus chr4.CM0500.260.nd N 0.704
PDK_20s1742611g001 Phoenix dactylifera PDK_20s1742611g001 N 0.704
B9P731_POPTR Populus trichocarpa POPTR_0323s00210 N 0.704
GRMZM2G009448 Zea mays GRMZM2G009448 N 0.704
BRADI1G22210 Brachypodium distachyon BRADI1G22210 N 0.704
A9PGV5_POPTR Populus trichocarpa POPTR_0001s32720 N 0.704