CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZC3HF_CHICK
(
Gallus gallus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSGALG00000002670
T02718_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000004195
CCCH ZF
75
100
PKSVVCAFFKQGQCTKGDKCKFSHDL
ENSGALP00000033355
CCCH ZF
140
165
PKSVVCAFFKQGQCTKGDKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Gallus gallus
RBPs
145 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava24191.valid.m1
Manihot esculenta
cassava24191.valid.m1
N
0.000
Cucsa.116130
Cucumis sativus
Cucsa.116130
N
0.000
Glyma05g08160.1
Glycine max
Glyma05g08160.1
N
0.000
Glyma17g12730.1
Glycine max
Glyma17g12730.1
N
0.000
MDP0000231316
Malus x domestica
MDP0000231316
N
0.000
ppa007582m
Prunus persica
ppa007582m
N
0.000