CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa007582m
(
Prunus persica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ppa007582m
T58388_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa007582m
RRM
9
78
VYVGGLPYDATEDRVRRVFELYGSVIAVKIINDASTRGKCYGFVTFRNPRSAIHAINEMDGRTVDGRVIR
Links
Other
RRM
family RBPs
Other
Prunus persica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000128136
Malus x domestica
MDP0000128136
N
0.929
MDP0000231316
Malus x domestica
MDP0000231316
N
0.914
Cucsa.116130
Cucumis sativus
Cucsa.116130
N
0.786
cassava24191.valid.m1
Manihot esculenta
cassava24191.valid.m1
N
0.757
Glyma17g12730.1
Glycine max
Glyma17g12730.1
N
0.729
Glyma05g08160.1
Glycine max
Glyma05g08160.1
N
0.714
29807.m000475
Ricinus communis
29807.m000475
N
0.700