CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava24191.valid.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava24191.valid.m1
T49213_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava24191.valid.m1
RRM
9
78
IYVGGLPYSATEDTVRRVFGPYGAIVAVKIINDHGTRGKCYGFVTFRNPRSVIDAINDMNGKTIDGRVVR
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29807.m000475
Ricinus communis
29807.m000475
N
0.914
Glyma05g08160.1
Glycine max
Glyma05g08160.1
N
0.786
Cucsa.116130
Cucumis sativus
Cucsa.116130
N
0.786
GSVIVG00015463001
Vitis vinifera
GSVIVG00015463001
N
0.771
Glyma17g12730.1
Glycine max
Glyma17g12730.1
N
0.771
ppa007582m
Prunus persica
ppa007582m
N
0.757
MDP0000128136
Malus x domestica
MDP0000128136
N
0.743
Medtr8g118890
Medicago truncatula
Medtr8g118890
N
0.743
MDP0000231316
Malus x domestica
MDP0000231316
N
0.743