Ppa-tag-331 (Pristionchus pacificus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PPA25510 T04092_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PPA25510 CCCH ZF 180 206

Links

Other CCCH ZF family RBPs
Other Pristionchus pacificus RBPs

227 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
15153_YLR323C Saccharomyces mikatae 15153_YLR323C N 0.000
15643_YLR323C Saccharomyces paradoxus 15643_YLR323C N 0.000
16613_YLR323C Saccharomyces bayanus 16613_YLR323C N 0.704
185736 Helobdella robusta 185736 N 0.815
29733.m000748 Ricinus communis 29733.m000748 N 0.815
29733.m000763 Ricinus communis 29733.m000763 N 0.815
4131 Aureococcus anophagefferens 4131 N 0.778
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.704
AAEL001778 Aedes aegypti AAEL001778 N 0.815
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.778
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.778
AGAP007068 Anopheles gambiae AGAP007068 N 0.815
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.000
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.000
An02g05190 Aspergillus niger CADANGAG00002035 N 0.741
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.778
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.778
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.778
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.000
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.815
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.815
CAGL0A00935g Candida glabrata CAGL0A00935g N 0.000
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.778
CG4973 Drosophila melanogaster FBgn0038772 N 0.815
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.704
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.815
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.704
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.778
CLUG_01324 Candida lusitaniae CLUG_01324 N 0.000
CMU_031370 Cryptosporidium muris CMU_031370 N 0.741
CPAG_04594 Candida parapsilosis CPAG_04594 N 0.000
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.815
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.815
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.778
CTRG_01084 Candida tropicalis CTRG_01084 N 0.000
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.778
CWC24 Ashbya gossypii CWC24 N 0.000
CWC24 Saccharomyces cerevisiae YLR323C N 0.704
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.000
DEHA0A07084g Debaryomyces hansenii DEHA0A07084g N 0.000
EDO07311.1 Babesia bovis EDO07311.1 N 0.778
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.704
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.741
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.815
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.815
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.741
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.704
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.778
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.741
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.704
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.778
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.741
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.741
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.741
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.741
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.815
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.741
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.741
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.741
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.778
e_gww1.2.1.1323.1 Pichia stipitis e_gww1.2.1.1323.1 N 0.000
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.815
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.704
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.741
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.704
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.815
GD19337 Drosophila simulans FBgn0190839 N 0.815
GE25648 Drosophila yakuba FBgn0242710 N 0.815
GF17636 Drosophila ananassae FBgn0094654 N 0.815
GG23724 Drosophila erecta FBgn0115865 N 0.815
GH22886 Drosophila grimshawi FBgn0130343 N 0.815
GI22714 Drosophila mojavensis FBgn0145441 N 0.815
GJ23438 Drosophila virilis FBgn0210538 N 0.778
GK22373 Drosophila willistoni FBgn0067112 N 0.815
GL12088 Drosophila persimilis FBgn0149696 N 0.815
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.741
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.815
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.815
gm1.100391 Emiliania huxleyi gm1.100391 N 0.000
GM17684 Drosophila sechellia FBgn0172592 N 0.815
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.815
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.741
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.704
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.778
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.778
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.704
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.704
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.704
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.741
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.000
KLLA0C18260g Kluyveromyces lactis KLLA0C18260g N 0.000
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.704
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.000
LELG_01192 Lodderomyces elongisporus LELG_01192 N 0.000
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.815
MCYG_07006 Microsporum canis MCYG_07006 N 0.778
MDP0000182690 Malus x domestica MDP0000182690 N 0.815
MDP0000202598 Malus x domestica MDP0000202598 N 0.815
MDP0000274000 Malus x domestica MDP0000274000 N 0.815
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.815
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.815
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.704
mgf009866m Mimulus guttatus mgf009866m N 0.815
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.741
NCU01954 Neurospora crassa NCU01954 N 0.704
orf19.2105 Candida albicans orf19.2105 N 0.000
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.704
Pc22g15470 Penicillium chrysogenum Pc22g15470 N 0.704
PGUG_02083 Candida guilliermondii PGUG_02083 N 0.000
PITG_04905 Phytophthora infestans PITG_04905 N 0.778
PK05761.1 Cannabis sativa PK05761.1 N 0.815
ppa009728m Prunus persica ppa009728m N 0.815
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.815
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.704
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.778
rnf113 Dictyostelium discoideum DDB_G0267870 N 0.741
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.815
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.000
SB04G009270 Sorghum bicolor Sb04g009270 N 0.815
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.704
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.704
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.000
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.000
s_444298 Phytophthora sojae s_444298 N 0.778
TA05795 Theileria annulata TA05795 N 0.778
TP01_0812 Theileria parva TP01_0812 N 0.778
UM05163 Ustilago maydis UM05163 N 0.741
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.778
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.778
XP_002490540.1 Pichia pastoris XP_002490540.1 N 0.000
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.704
ZYRO0G10956g Zygosaccharomyces rouxii ZYRO0G10956g N 0.000