rnf113 (Dictyostelium discoideum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 DDB_G0267870 T02204_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
DDB0233743 CCCH ZF 211 236

Links

Other CCCH ZF family RBPs
Other Dictyostelium discoideum RBPs

236 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.963
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.889
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.815
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.815
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.815
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.815
EDO07311.1 Babesia bovis EDO07311.1 N 0.815
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.815
CMU_031370 Cryptosporidium muris CMU_031370 N 0.815
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.815
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.815
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.815
An02g05190 Aspergillus niger CADANGAG00002035 N 0.815
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.815
UM05163 Ustilago maydis UM05163 N 0.815
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.815
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.815
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.815
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.808
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.808
NCU01954 Neurospora crassa NCU01954 N 0.808
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.808
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.778
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.778
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.778
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.778
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.778
AGAP007068 Anopheles gambiae AGAP007068 N 0.778
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.778
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.778
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.778
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.778
185736 Helobdella robusta 185736 N 0.778
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.778
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.778
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.778
AAEL001778 Aedes aegypti AAEL001778 N 0.778
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.778
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.778
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.778
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.778
AAR97523 Xenopus laevis AAR97523 N 0.778
Bm1_06930 Brugia malayi Bm1_06930 N 0.778
AAI33788 Xenopus laevis AAI33788 N 0.778
AAH97882 Xenopus laevis AAH97882 N 0.778
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.778
XP_002490540.1 Pichia pastoris XP_002490540.1 N 0.778
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.778
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.778
PITG_04905 Phytophthora infestans PITG_04905 N 0.778
LOAG_01140 Loa loa LOAG_01140 N 0.778
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.778
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.778
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.778
TP01_0812 Theileria parva TP01_0812 N 0.778
TA05795 Theileria annulata TA05795 N 0.778
CWC24 Saccharomyces cerevisiae YLR323C N 0.778
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.778
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.778
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.778
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.778
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.778
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.778
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.778
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.778
Smp_033590 Schistosoma mansoni Smp_033590 N 0.778
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.778
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.778
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.778
s_444298 Phytophthora sojae s_444298 N 0.778
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.778
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.778
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.778
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.778
RNF113A Procavia capensis ENSPCAG00000014633 N 0.778
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.778
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.778
RNF113A Microcebus murinus ENSMICG00000001750 N 0.778
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.778
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.778
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.778
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.778
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.778
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.778
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.778
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.778
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.778
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.778
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.778
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.778
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.778
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.778
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.778
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.778
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.778
rnf113a Danio rerio ENSDARG00000037930 N 0.778
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.778
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.778
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.778
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.778
LOC518027 Bos taurus ENSBTAG00000008684 N 0.778
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.778
LOC100058519 Equus caballus ENSECAG00000003934 N 0.778
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.778
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.778
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.778
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.778
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.778
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.778
RNF113A Echinops telfairi ENSETEG00000018346 N 0.778
RNF113A Homo sapiens ENSG00000125352 N 0.778
RNF113B Homo sapiens ENSG00000139797 N 0.778
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.778
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.778
GI22714 Drosophila mojavensis FBgn0145441 N 0.778
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.778
GL12088 Drosophila persimilis FBgn0149696 N 0.778
PHUM169980 Pediculus humanus PHUM169980 N 0.778
GE25648 Drosophila yakuba FBgn0242710 N 0.778
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.778
GM17684 Drosophila sechellia FBgn0172592 N 0.778
GD19337 Drosophila simulans FBgn0190839 N 0.778
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.778
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.778
CG4973 Drosophila melanogaster FBgn0038772 N 0.778
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.778
GH22886 Drosophila grimshawi FBgn0130343 N 0.778
GK22373 Drosophila willistoni FBgn0067112 N 0.778
GF17636 Drosophila ananassae FBgn0094654 N 0.778
GG23724 Drosophila erecta FBgn0115865 N 0.778
e_gw1.1.717.1 Myceliophthora thermophila e_gw1.1.717.1 N 0.769
Pa_1_20620 Podospora anserina Pa_1_20620 N 0.769
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.741
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.741
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.741
GLRG_04651 Colletotrichum graminicola GLRG_04651 N 0.741
ISCW023200 Ixodes scapularis ISCW023200 N 0.741
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.741
rnf-113 Caenorhabditis elegans K01G5.1 N 0.741
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.741
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.741
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.741
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.741
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.741
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.741
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.741
CJA02847 Caenorhabditis japonica CJA02847 N 0.741
CAOG_06860 Capsaspora owczarzaki CAOG_06860 N 0.741
4131 Aureococcus anophagefferens 4131 N 0.741
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.741
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.741
Minc18333 Meloidogyne incognita Minc18333 N 0.741
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.741
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.741
CBG18314 Caenorhabditis briggsae CBG18314 N 0.741
CRE04837 Caenorhabditis remanei CRE04837 N 0.741
GJ23438 Drosophila virilis FBgn0210538 N 0.741
16613_YLR323C Saccharomyces bayanus 16613_YLR323C N 0.741
15643_YLR323C Saccharomyces paradoxus 15643_YLR323C N 0.741
MGG_02960 Magnaporthe oryzae MGG_02960 N 0.741
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.741
MCYG_07006 Microsporum canis MCYG_07006 N 0.741
CAGL0A00935g Candida glabrata CAGL0A00935g N 0.741
15153_YLR323C Saccharomyces mikatae 15153_YLR323C N 0.741
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.741
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.741
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.741
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.741
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.741
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.741
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.741
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.741
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.741
CBN12332 Caenorhabditis brenneri CBN12332 N 0.741
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.741
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.741
CWC24 Ashbya gossypii CWC24 N 0.741
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.741
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.741
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.741
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.741
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.741
PMAA_037770 Penicillium marneffei PMAA_037770 N 0.731
ZYRO0G10956g Zygosaccharomyces rouxii ZYRO0G10956g N 0.731
ANIA_07755 Aspergillus nidulans CADANIAG00000892 N 0.704
PGUG_02083 Candida guilliermondii PGUG_02083 N 0.704
TERG_03941 Trichophyton rubrum TERG_03941 N 0.704
UREG_07314 Uncinocarpus reesii UREG_07314 N 0.704
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.704
PK05761.1 Cannabis sativa PK05761.1 N 0.704
TRV_01821 Trichophyton verrucosum TRV_01821 N 0.704
TESG_00049 Trichophyton tonsurans TESG_00049 N 0.704
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.704
SS1G_11427 Sclerotinia sclerotiorum SS1G_11427 N 0.704
TEQG_05573 Trichophyton equinum TEQG_05573 N 0.704
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.704
mgf009866m Mimulus guttatus mgf009866m N 0.704
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 0.704
fgenesh2_pg.scaffold_2135000001 Branchiostoma floridae fgenesh2_pg.scaffold_2135000001 N 0.704
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.704
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.704
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.704
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.704
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.704
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.704
e_gww1.2.1.1323.1 Pichia stipitis e_gww1.2.1.1323.1 N 0.704
e_gw1.32.54.1 Fragilariopsis cylindrus e_gw1.32.54.1 N 0.704
SB04G009270 Sorghum bicolor Sb04g009270 N 0.704
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.704
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.704
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.704
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.704
29733.m000763 Ricinus communis 29733.m000763 N 0.704
29733.m000748 Ricinus communis 29733.m000748 N 0.704
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.704
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.704
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.704
CPAG_04594 Candida parapsilosis CPAG_04594 N 0.704
CLUG_01324 Candida lusitaniae CLUG_01324 N 0.704
BC1G_08876 Botrytis cinerea BC1G_08876 N 0.704
CTRG_01084 Candida tropicalis CTRG_01084 N 0.704
DEHA0A07084g Debaryomyces hansenii DEHA0A07084g N 0.704
LELG_01192 Lodderomyces elongisporus LELG_01192 N 0.704
FVEG_11063 Fusarium verticillioides FVEG_11063 N 0.704
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.704
ARB_03970 Arthroderma benhamiae ARB_03970 N 0.704
ppa009728m Prunus persica ppa009728m N 0.704
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.704
Cd36_15260 Candida dubliniensis Cd36_15260 N 0.704
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.704
estExt_Genewise1Plus.C_21344 Tremella mesenterica estExt_Genewise1Plus.C_21344 N 0.704
MDP0000182690 Malus x domestica MDP0000182690 N 0.704
Pc22g15470 Penicillium chrysogenum Pc22g15470 N 0.704
MDP0000274000 Malus x domestica MDP0000274000 N 0.704
MDP0000202598 Malus x domestica MDP0000202598 N 0.704
MGYG_03604 Microsporum gypseum MGYG_03604 N 0.704