CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava18744.valid.m1
(
Manihot esculenta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
cassava18744.valid.m1
T04752_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava18744.valid.m1
CCCH ZF
1475
1500
KGQRVCKFYESGYCKKGASCSYWHPS
Links
Other
CCCH ZF
family RBPs
Other
Manihot esculenta
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT2G07550
Arabidopsis thaliana
AT2G07550-TAIR-G
N
0.000
AT4G10460
Arabidopsis thaliana
AT4G10460-TAIR-G
N
0.000