cassava18744.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava18744.valid.m1 T04752_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava18744.valid.m1 CCCH ZF 1475 1500

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

11 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0005s11920 Populus trichocarpa POPTR_0005s11920 N 0.962
B9NDJ8_POPTR Populus trichocarpa POPTR_0007s13760 N 0.962
Glyma11g07890.1 Glycine max Glyma11g07890.1 N 0.923
28140.m000105 Ricinus communis 28140.m000105 N 0.885
chr2.CM0249.60.nd Lotus japonicus chr2.CM0249.60.nd N 0.885
Medtr5g021410 Medicago truncatula Medtr5g021410 N 0.846
GSVIVG00018827001 Vitis vinifera GSVIVG00018827001 N 0.808
PK00327.1 Cannabis sativa PK00327.1 N 0.808
XM_002877743.1 Arabidopsis lyrata scaffold_502165.1 N 0.769
AT3G51120 Arabidopsis thaliana AT3G51120-TAIR-G N 0.769
PK14581.1 Cannabis sativa PK14581.1 N 0.769