CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_01104
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_01104
T08329_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_01104T0
CCHC ZF
236
253
VACANCGRRGHRSSECPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ANIA_02865
Aspergillus nidulans
CADANIAG00010225
N
0.000
LOC_Os01g16850
Oryza sativa
LOC_Os01g16850
N
0.000
LOC_Os01g50090
Oryza sativa
LOC_Os01g50090
N
0.000
LOC_Os02g06810
Oryza sativa
LOC_Os02g06810
N
0.000
LOC_Os02g17720
Oryza sativa
LOC_Os02g17720
N
0.000
LOC_Os02g20200
Oryza sativa
LOC_Os02g20200
N
0.000
LOC_Os04g13350
Oryza sativa
LOC_Os04g13350
N
0.000
LOC_Os04g24570
Oryza sativa
LOC_Os04g24570
N
0.000
LOC_Os04g35870
Oryza sativa
LOC_Os04g35870
N
0.000
LOC_Os04g41520
Oryza sativa
LOC_Os04g41520
N
0.000
LOC_Os05g03600
Oryza sativa
LOC_Os05g03600
N
0.000
LOC_Os06g05680
Oryza sativa
LOC_Os06g05680
N
0.000
LOC_Os06g06802
Oryza sativa
LOC_Os06g06802
N
0.000
LOC_Os06g41690
Oryza sativa
LOC_Os06g41690
N
0.000
LOC_Os07g05600
Oryza sativa
LOC_Os07g05600
N
0.000
LOC_Os07g17260
Oryza sativa
LOC_Os07g17260
N
0.000
LOC_Os07g18970
Oryza sativa
LOC_Os07g18970
N
0.000
LOC_Os08g15010
Oryza sativa
LOC_Os08g15010
N
0.000
LOC_Os08g28530
Oryza sativa
LOC_Os08g28530
N
0.000
LOC_Os09g14500
Oryza sativa
LOC_Os09g14500
N
0.000
LOC_Os09g16100
Oryza sativa
LOC_Os09g16100
N
0.000
LOC_Os09g29810
Oryza sativa
LOC_Os09g29810
N
0.000
LOC_Os10g17540
Oryza sativa
LOC_Os10g17540
N
0.000
LOC_Os10g29420
Oryza sativa
LOC_Os10g29420
N
0.000
LOC_Os10g41610
Oryza sativa
LOC_Os10g41610
N
0.000
LOC_Os11g10630
Oryza sativa
LOC_Os11g10630
N
0.000
LOC_Os11g44190
Oryza sativa
LOC_Os11g44190
N
0.000
LOC_Os11g45610
Oryza sativa
LOC_Os11g45610
N
0.000
LOC_Os12g01790
Oryza sativa
LOC_Os12g01790
N
0.000
LOC_Os12g07910
Oryza sativa
LOC_Os12g07910
N
0.000
LOC_Os12g09260
Oryza sativa
LOC_Os12g09260
N
0.000
LOC_Os12g10900
Oryza sativa
LOC_Os12g10900
N
0.000
LOC_Os12g40060
Oryza sativa
LOC_Os12g40060
N
0.000
MDP0000154442
Malus x domestica
MDP0000154442
N
0.000