LOC_Os12g07910 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os12g07910 T12480_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g07910.1 CCHC ZF 291 308

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os04g24570 Oryza sativa LOC_Os04g24570 N 1.000
LOC_Os10g29420 Oryza sativa LOC_Os10g29420 N 1.000
LOC_Os07g05600 Oryza sativa LOC_Os07g05600 N 1.000
LOC_Os11g45610 Oryza sativa LOC_Os11g45610 N 1.000
LOC_Os10g07578 Oryza sativa LOC_Os10g07578 N 0.944
LOC_Os08g28530 Oryza sativa LOC_Os08g28530 N 0.944
LOC_Os05g03600 Oryza sativa LOC_Os05g03600 N 0.944
LOC_Os03g30810 Oryza sativa LOC_Os03g30810 N 0.944
LOC_Os09g16100 Oryza sativa LOC_Os09g16100 N 0.944
LOC_Os11g06960 Oryza sativa LOC_Os11g06960 N 0.944
LOC_Os11g11860 Oryza sativa LOC_Os11g11860 N 0.944
LOC_Os01g50090 Oryza sativa LOC_Os01g50090 N 0.889
LOC_Os01g16850 Oryza sativa LOC_Os01g16850 N 0.889
LOC_Os11g44190 Oryza sativa LOC_Os11g44190 N 0.889
LOC_Os06g05680 Oryza sativa LOC_Os06g05680 N 0.889
LOC_Os02g06810 Oryza sativa LOC_Os02g06810 N 0.889
LOC_Os02g20200 Oryza sativa LOC_Os02g20200 N 0.889
LOC_Os02g17720 Oryza sativa LOC_Os02g17720 N 0.889
LOC_Os05g48170 Oryza sativa LOC_Os05g48170 N 0.889
LOC_Os06g06802 Oryza sativa LOC_Os06g06802 N 0.889
LOC_Os08g15010 Oryza sativa LOC_Os08g15010 N 0.889
LOC_Os09g29810 Oryza sativa LOC_Os09g29810 N 0.889
LOC_Os12g09260 Oryza sativa LOC_Os12g09260 N 0.889
LOC_Os04g35870 Oryza sativa LOC_Os04g35870 N 0.889
LOC_Os09g14500 Oryza sativa LOC_Os09g14500 N 0.889
LOC_Os04g41520 Oryza sativa LOC_Os04g41520 N 0.889
LOC_Os10g41610 Oryza sativa LOC_Os10g41610 N 0.889
LOC_Os12g40060 Oryza sativa LOC_Os12g40060 N 0.889
LOC_Os04g13350 Oryza sativa LOC_Os04g13350 N 0.889
LOC_Os07g18970 Oryza sativa LOC_Os07g18970 N 0.833
LOC_Os10g17540 Oryza sativa LOC_Os10g17540 N 0.833
LOC_Os11g10630 Oryza sativa LOC_Os11g10630 N 0.833
LOC_Os11g43560 Oryza sativa LOC_Os11g43560 N 0.833
LOC_Os10g03110 Oryza sativa LOC_Os10g03110 N 0.833
LOC_Os08g29980 Oryza sativa LOC_Os08g29980 N 0.833
LOC_Os06g41690 Oryza sativa LOC_Os06g41690 N 0.833
LOC_Os07g18730 Oryza sativa LOC_Os07g18730 N 0.833
LOC_Os04g49290 Oryza sativa LOC_Os04g49290 N 0.833
LOC_Os06g28330 Oryza sativa LOC_Os06g28330 N 0.833
LOC_Os04g22050 Oryza sativa LOC_Os04g22050 N 0.833
LOC_Os12g10900 Oryza sativa LOC_Os12g10900 N 0.833
LOC_Os10g07460 Oryza sativa LOC_Os10g07460 N 0.778
LOC_Os04g18244 Oryza sativa LOC_Os04g18244 N 0.778
LOC_Os07g17260 Oryza sativa LOC_Os07g17260 N 0.778
LOC_Os01g70540 Oryza sativa LOC_Os01g70540 N 0.778
LOC_Os04g12100 Oryza sativa LOC_Os04g12100 N 0.778
LOC_Os04g12000 Oryza sativa LOC_Os04g12000 N 0.778
LOC_Os04g07580 Oryza sativa LOC_Os04g07580 N 0.778
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 0.722
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 0.722
fgenesh1_pg.C_scaffold_20000020 Phytophthora ramorum fgenesh1_pg.C_scaffold_20000020 N 0.722
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 0.722
Aqu1.204126 Amphimedon queenslandica Aqu1.204126 N 0.722
LOC_Os12g24290 Oryza sativa LOC_Os12g24290 N 0.722
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 0.722
EuGene.0000020314 Micromonas pusilla EuGene.0000020314 N 0.722
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 0.722
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 0.722
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 0.722
fgenesh1_pg.C_scaffold_911000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_911000002 N 0.722
LOC_Os08g03880 Oryza sativa LOC_Os08g03880 N 0.722
PGTG_05870 Puccinia graminis PGTG_05870 N 0.722
DGIL_AUG5s9216g3t1 Acyrtosiphon pisum DGIL_AUG5s9216g3t1 N 0.722
LOC_Os02g38000 Oryza sativa LOC_Os02g38000 N 0.722
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 0.722
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 0.722
LOC_Os09g21840 Oryza sativa LOC_Os09g21840 N 0.722
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 0.722
LOC_Os08g40550 Oryza sativa LOC_Os08g40550 N 0.722
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 0.722
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 0.722