CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ddx41
(
Dipodomys ordii
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSDORG00000010781
T10134_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000010131
CCHC ZF
575
592
RGCAFCGGLGHRITDCPK
Links
Other
CCHC ZF
family RBPs
Other
Dipodomys ordii
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL003670
Aedes aegypti
AAEL003670
I
0.000
CPIJ011705
Culex quinquefasciatus
CPIJ011705
I
0.000
CpipJ_CPIJ011705
Culex pipiens
CpipJ_CPIJ011705
I
0.000
GA21738-RA
Drosophila pseudoobscura
FBgn0081723
I
0.000
GD20792
Drosophila simulans
FBgn0192255
I
0.000
GE24772
Drosophila yakuba
FBgn0241875
I
0.000
GF16058
Drosophila ananassae
FBgn0093080
I
0.000
GG17367
Drosophila erecta
FBgn0109594
I
0.000
GH19397
Drosophila grimshawi
FBgn0126862
I
0.000
GI22600
Drosophila mojavensis
FBgn0145328
I
0.000
GJ23846
Drosophila virilis
FBgn0210941
I
0.000
GK14301
Drosophila willistoni
FBgn0216307
I
0.000
GL22228
Drosophila persimilis
FBgn0159820
I
0.000
GM26253
Drosophila sechellia
FBgn0181108
I
0.000
rump
Drosophila melanogaster
FBgn0260010
D
0.000