CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os01g38058
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os01g38058
T10811_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g38058.1
CCHC ZF
309
326
QVCFNCYKPGHFARECPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB02178.1
Alternaria brassicicola
AB02178.1
N
0.000
ACLA_037570
Aspergillus clavatus
CADACLAG00003297
N
0.000
AFLA_085050
Aspergillus flavus
CADAFLAG00001284
N
0.000
AFUA_3G09770
Aspergillus fumigatus
CADAFUAG00005073
N
0.000
An16g03400
Aspergillus niger
CADANGAG00012812
N
0.000
ANIA_05009
Aspergillus nidulans
CADANIAG00005383
N
0.000
AO090005001273
Aspergillus oryzae
CADAORAG00003159
N
0.000
ATEG_04498
Aspergillus terreus
CADATEAG00009601
N
0.000
EAT78031.2
Phaeosphaeria nodorum
EAT78031.2
N
0.000
fgenesh1_pm.00168_#_218
Aspergillus carbonarius
fgenesh1_pm.00168_#_218
N
0.000
GSTUMT00007469001
Tuber melanosporum
GSTUMT00007469001
N
0.000
MCYG_03431
Microsporum canis
MCYG_03431
N
0.000
MGYG_00597
Microsporum gypseum
MGYG_00597
N
0.000
NFIA_067530
Neosartorya fischeri
CADNFIAG00005936
N
0.000
Pc12g15760
Penicillium chrysogenum
Pc12g15760
N
0.000
Pc22g26960
Penicillium chrysogenum
Pc22g26960
N
0.000
PMAA_025600
Penicillium marneffei
PMAA_025600
N
0.000
PTRG_03270
Pyrenophora tritici repentis
PTRG_03270
N
0.000
SNOG_14491
Stagonospora nodorum
SNOG_14491
N
0.000
TEQG_00939
Trichophyton equinum
TEQG_00939
N
0.000
TERG_00938
Trichophyton rubrum
TERG_00938
N
0.000
TESG_04474
Trichophyton tonsurans
TESG_04474
N
0.000
TRV_03302
Trichophyton verrucosum
TRV_03302
N
0.000