CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os03g39450
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os03g39450
T11070_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os03g39450.1
CCHC ZF
585
602
GVCFNCGEAGHYSDKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
367 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.000
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.000
ENSPPYG00000025850
Pongo pygmaeus
ENSPPYG00000025850
N
0.000
LOC100397230
Callithrix jacchus
ENSCJAG00000004122
N
0.000
LOC100397230
Callithrix jacchus
ENSCJAG00000008143
N
0.000