CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os04g13810
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g13810
T11192_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g13810.1
CCHC ZF
460
477
EVCFNCGDPRHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
242 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP005292
Anopheles gambiae
AGAP005292
N
0.000
CG34354
Drosophila melanogaster
FBgn0085383
N
0.000
CG34362
Drosophila melanogaster
FBgn0085391
N
0.000
DGIL_AUG5s2018g1t1
Acyrtosiphon pisum
DGIL_AUG5s2018g1t1
N
0.000
GA26680-RA
Drosophila pseudoobscura
FBgn0248053
N
0.000
GD21364
Drosophila simulans
FBgn0192801
N
0.000
GD21365
Drosophila simulans
FBgn0192802
N
0.000
GE23777
Drosophila yakuba
FBgn0240933
N
0.000
GF18875
Drosophila ananassae
FBgn0095889
N
0.000
GG11588
Drosophila erecta
FBgn0103885
N
0.000
GH17439
Drosophila grimshawi
FBgn0124909
N
0.000
GJ22768
Drosophila virilis
FBgn0209872
N
0.000
GJ22770
Drosophila virilis
FBgn0209874
N
0.000
GK22641
Drosophila willistoni
FBgn0224618
N
0.000
GL23648
Drosophila persimilis
FBgn0161238
N
0.000
GM16370
Drosophila sechellia
FBgn0171285
N
0.000
PHUM511750
Pediculus humanus
PHUM511750
N
0.000